ENH: Fix unitialized read in img_fol (we may need a smarter initialize than memset)
[openjpeg.git] / codec / image_to_j2k.c
index b5e056dfd979d4157a106c57cb1ae1de866f5d81..cbb9d0bc62684fec4b1e0e8543c870d32e6d736d 100644 (file)
@@ -32,6 +32,7 @@
 #include <stdio.h>
 #include <string.h>
 #include <stdlib.h>
+#include <math.h>
 
 #include "openjpeg.h"
 #include "compat/getopt.h"
@@ -54,6 +55,8 @@
 #define BMP_DFMT 12
 #define YUV_DFMT 13
 #define TIF_DFMT 14
+#define RAW_DFMT 15
+#define TGA_DFMT 16
 
 /* ----------------------------------------------------------------------- */
 #define CINEMA_24_CS 1302083   /*Codestream length for 24fps*/
@@ -77,7 +80,6 @@ typedef struct img_folder{
        char set_imgdir;
        /** Enable Cod Format for output*/
        char set_out_format;
-
 }img_fol_t;
 
 void encode_help_display() {
@@ -98,10 +100,6 @@ void encode_help_display() {
        fprintf(stdout,"The markers written to the main_header are : SOC SIZ COD QCD COM.\n");
        fprintf(stdout,"COD and QCD never appear in the tile_header.\n");
        fprintf(stdout,"\n");
-       fprintf(stdout,"- This coder can encode a mega image, a test was made on a 24000x24000 pixels \n");
-       fprintf(stdout,"color image.  You need enough disk space memory (twice the original) to encode \n");
-       fprintf(stdout,"the image,i.e. for a 1.5 GB image you need a minimum of 3GB of disk memory)\n");
-       fprintf(stdout,"\n");
        fprintf(stdout,"By default:\n");
        fprintf(stdout,"------------\n");
        fprintf(stdout,"\n");
@@ -138,9 +136,9 @@ void encode_help_display() {
        fprintf(stdout,"-OutFor \n");
        fprintf(stdout,"    REQUIRED only if -ImgDir is used\n");
        fprintf(stdout,"          Need to specify only format without filename <BMP>  \n");
-       fprintf(stdout,"    Currently accepts PGM, PPM, PNM, PGX, BMP format\n");
+       fprintf(stdout,"    Currently accepts PGM, PPM, PNM, PGX, BMP, TIF, RAW and TGA formats\n");
        fprintf(stdout,"\n");
-       fprintf(stdout,"-i           : source file  (-i source.pnm also *.pgm, *.ppm) \n");
+       fprintf(stdout,"-i           : source file  (-i source.pnm also *.pgm, *.ppm, *.bmp, *.tif, *.raw, *.tga) \n");
        fprintf(stdout,"    When using this option -o must be used\n");
        fprintf(stdout,"\n");
        fprintf(stdout,"-o           : destination file (-o dest.j2k or .jp2) \n");
@@ -149,10 +147,10 @@ void encode_help_display() {
        fprintf(stdout,"\n");
        fprintf(stdout,"-h           : display the help information \n ");
        fprintf(stdout,"\n");
-       fprintf(stdout,"-cinema2k    : Digital Cinema 2K profile compliant codestream for 2K resolution.(-cinema2k 24 or 48) \n");
+       fprintf(stdout,"-cinema2K    : Digital Cinema 2K profile compliant codestream for 2K resolution.(-cinema2k 24 or 48) \n");
   fprintf(stdout,"       Need to specify the frames per second for a 2K resolution. Only 24 or 48 fps is allowed\n"); 
        fprintf(stdout,"\n");
-       fprintf(stdout,"-cinema4k    : Digital Cinema 4K profile compliant codestream for 4K resolution \n");
+       fprintf(stdout,"-cinema4K    : Digital Cinema 4K profile compliant codestream for 4K resolution \n");
        fprintf(stdout,"          Frames per second not required. Default value is 24fps\n"); 
        fprintf(stdout,"\n");
        fprintf(stdout,"-r           : different compression ratios for successive layers (-r 20,10,5)\n ");
@@ -211,31 +209,31 @@ void encode_help_display() {
 #ifdef USE_JPWL
        fprintf(stdout,"-W           : adoption of JPWL (Part 11) capabilities (-W params)\n");
        fprintf(stdout,"               The parameters can be written and repeated in any order:\n");
-       fprintf(stdout,"               [h<tile><=type>,s<tile><=method>,a=<addr>,z=<size>,g=<range>,...\n");
-       fprintf(stdout,"                ...,p<tile:pack><=type>]\n");
+       fprintf(stdout,"               [h<tilepart><=type>,s<tilepart><=method>,a=<addr>,...\n");
+       fprintf(stdout,"                ...,z=<size>,g=<range>,p<tilepart:pack><=type>]\n");
        fprintf(stdout,"\n");
        fprintf(stdout,"                 h selects the header error protection (EPB): 'type' can be\n");
        fprintf(stdout,"                   [0=none 1,absent=predefined 16=CRC-16 32=CRC-32 37-128=RS]\n");
-       fprintf(stdout,"                   if 'tile' is absent, it applies to main and tile headers\n");
-       fprintf(stdout,"                   if 'tile' is present, it applies from that tile\n");
-       fprintf(stdout,"                     onwards, up to the next h<tile> spec, or to the last tile\n");
+       fprintf(stdout,"                   if 'tilepart' is absent, it is for main and tile headers\n");
+       fprintf(stdout,"                   if 'tilepart' is present, it applies from that tile\n");
+       fprintf(stdout,"                     onwards, up to the next h<> spec, or to the last tilepart\n");
        fprintf(stdout,"                     in the codestream (max. %d specs)\n", JPWL_MAX_NO_TILESPECS);
        fprintf(stdout,"\n");
        fprintf(stdout,"                 p selects the packet error protection (EEP/UEP with EPBs)\n");
        fprintf(stdout,"                  to be applied to raw data: 'type' can be\n");
        fprintf(stdout,"                   [0=none 1,absent=predefined 16=CRC-16 32=CRC-32 37-128=RS]\n");
-       fprintf(stdout,"                   if 'tile:pack' is absent, it starts from tile 0, packet 0\n");
-       fprintf(stdout,"                   if 'tile:pack' is present, it applies from that tile\n");
+       fprintf(stdout,"                   if 'tilepart:pack' is absent, it is from tile 0, packet 0\n");
+       fprintf(stdout,"                   if 'tilepart:pack' is present, it applies from that tile\n");
        fprintf(stdout,"                     and that packet onwards, up to the next packet spec\n");
-       fprintf(stdout,"                     or to the last packet in the last tile in the codestream\n");
+       fprintf(stdout,"                     or to the last packet in the last tilepart in the stream\n");
        fprintf(stdout,"                     (max. %d specs)\n", JPWL_MAX_NO_PACKSPECS);
        fprintf(stdout,"\n");
        fprintf(stdout,"                 s enables sensitivity data insertion (ESD): 'method' can be\n");
        fprintf(stdout,"                   [-1=NO ESD 0=RELATIVE ERROR 1=MSE 2=MSE REDUCTION 3=PSNR\n");
        fprintf(stdout,"                    4=PSNR INCREMENT 5=MAXERR 6=TSE 7=RESERVED]\n");
-       fprintf(stdout,"                   if 'tile' is absent, it applies to main header only\n");
-       fprintf(stdout,"                   if 'tile' is present, it applies from that tile\n");
-       fprintf(stdout,"                     onwards, up to the next s<tile> spec, or to the last tile\n");
+       fprintf(stdout,"                   if 'tilepart' is absent, it is for main header only\n");
+       fprintf(stdout,"                   if 'tilepart' is present, it applies from that tile\n");
+       fprintf(stdout,"                     onwards, up to the next s<> spec, or to the last tilepart\n");
        fprintf(stdout,"                     in the codestream (max. %d specs)\n", JPWL_MAX_NO_TILESPECS);
        fprintf(stdout,"\n");
        fprintf(stdout,"                 g determines the addressing mode: <range> can be\n");
@@ -248,15 +246,16 @@ void encode_help_display() {
        fprintf(stdout,"                   1/2 bytes, for the transformed pseudo-floating point value\n");
        fprintf(stdout,"\n");
        fprintf(stdout,"                 ex.:\n");
-       fprintf(stdout," h,h0=64,h3=16,h5=32,p0=78,p0:24=56,p1,p3:0=0,p3:20=32,s=0,s0=6,s3=-1,a=0,g=1,z=1\n");
+       fprintf(stdout,"                   h,h0=64,h3=16,h5=32,p0=78,p0:24=56,p1,p3:0=0,p3:20=32,s=0,\n");
+       fprintf(stdout,"                     s0=6,s3=-1,a=0,g=1,z=1\n");
        fprintf(stdout,"                 means\n");
        fprintf(stdout,"                   predefined EPB in MH, rs(64,32) from TPH 0 to TPH 2,\n");
        fprintf(stdout,"                   CRC-16 in TPH 3 and TPH 4, CRC-32 in remaining TPHs,\n");
        fprintf(stdout,"                   UEP rs(78,32) for packets 0 to 23 of tile 0,\n");
-       fprintf(stdout,"                   UEP rs(56,32) for packets 24 to the last of tile 0,\n");
-       fprintf(stdout,"                   UEP rs default for packets of tile 1,\n");
-       fprintf(stdout,"                   no UEP for packets 0 to 19 of tile 3,\n");
-       fprintf(stdout,"                   UEP CRC-32 for packets 20 of tile 3 to last tile,\n");
+       fprintf(stdout,"                   UEP rs(56,32) for packs. 24 to the last of tilepart 0,\n");
+       fprintf(stdout,"                   UEP rs default for packets of tilepart 1,\n");
+       fprintf(stdout,"                   no UEP for packets 0 to 19 of tilepart 3,\n");
+       fprintf(stdout,"                   UEP CRC-32 for packs. 20 of tilepart 3 to last tilepart,\n");
        fprintf(stdout,"                   relative sensitivity ESD for MH,\n");
        fprintf(stdout,"                   TSE ESD from TPH 0 to TPH 2, byte range with automatic\n");
        fprintf(stdout,"                   size of addresses and 1 byte for each sensitivity value\n");
@@ -282,9 +281,7 @@ void encode_help_display() {
        fprintf(stdout,"Image_height Image_width\n");
        fprintf(stdout,"progression order\n");
        fprintf(stdout,"Tiles_size_X Tiles_size_Y\n");
-/* UniPG>> */
        fprintf(stdout,"Tiles_nb_X Tiles_nb_Y\n");
-/* <<UniPG */
        fprintf(stdout,"Components_nb\n");
        fprintf(stdout,"Layers_nb\n");
        fprintf(stdout,"decomposition_levels\n");
@@ -375,10 +372,10 @@ int load_images(dircnt_t *dirptr, char *imgdirpath){
 int get_file_format(char *filename) {
        unsigned int i;
        static const char *extension[] = {
-    "pgx", "pnm", "pgm", "ppm", "bmp","tif", "j2k", "jp2"
+    "pgx", "pnm", "pgm", "ppm", "bmp", "tif", "raw", "tga", "j2k", "jp2", "j2c"
     };
        static const int format[] = {
-    PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT,TIF_DFMT, J2K_CFMT, JP2_CFMT
+    PGX_DFMT, PXM_DFMT, PXM_DFMT, PXM_DFMT, BMP_DFMT, TIF_DFMT, RAW_DFMT, TGA_DFMT, J2K_CFMT, JP2_CFMT, J2K_CFMT
     };
        char * ext = strrchr(filename, '.');
        if (ext == NULL)
@@ -389,7 +386,6 @@ int get_file_format(char *filename) {
                        return format[i];
                }
        }
-
        return -1;
 }
 
@@ -402,6 +398,7 @@ char * get_file_name(char *name){
 
 char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_cparameters_t *parameters){
        char image_filename[OPJ_PATH_LEN], infilename[OPJ_PATH_LEN],outfilename[OPJ_PATH_LEN],temp_ofname[OPJ_PATH_LEN];
+  char *temp_p, temp1[OPJ_PATH_LEN]="";
 
        strcpy(image_filename,dirptr->filename[imageno]);
        fprintf(stderr,"File Number %d \"%s\"\n",imageno,image_filename);
@@ -413,6 +410,10 @@ char get_next_file(int imageno,dircnt_t *dirptr,img_fol_t *img_fol, opj_cparamet
 
        //Set output file
        strcpy(temp_ofname,get_file_name(image_filename));
+       while((temp_p = strtok(NULL,".")) != NULL){
+               strcat(temp_ofname,temp1);
+               sprintf(temp1,".%s",temp_p);
+       }
        if(img_fol->set_out_format==1){
                sprintf(outfilename,"%s/%s.%s",img_fol->imgdirpath,temp_ofname,img_fol->out_format);
                strncpy(parameters->outfile, outfilename, sizeof(outfilename));
@@ -465,6 +466,10 @@ void cinema_parameters(opj_cparameters_t *parameters){
        parameters->roi_compno = -1;
 
        parameters->subsampling_dx = 1;         parameters->subsampling_dy = 1;
+
+       /* 9-7 transform */
+       parameters->irreversible = 1;
+
 }
 
 void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image){
@@ -478,8 +483,10 @@ void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image){
                if(parameters->numresolution > 6){
                        parameters->numresolution = 6;
                }
-               if (!((image->comps[0].w == 2048) & (image->comps[0].h == 1080))){
-                       fprintf(stdout,"Image coordinates %d x %d is not 2K compliant.\nDCI 2K compliance requires that atleast one of coordinates match 2048 x 1080\n",image->comps[0].w,image->comps[0].h);
+               if (!((image->comps[0].w == 2048) | (image->comps[0].h == 1080))){
+                       fprintf(stdout,"Image coordinates %d x %d is not 2K compliant.\nJPEG Digital Cinema Profile-3 "
+                               "(2K profile) compliance requires that at least one of coordinates match 2048 x 1080\n",
+                               image->comps[0].w,image->comps[0].h);
                        parameters->cp_rsiz = STD_RSIZ;
                }
        break;
@@ -490,8 +497,10 @@ void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image){
                        }else if(parameters->numresolution > 7){
                                parameters->numresolution = 7;
                        }
-               if (!((image->comps[0].w == 4096) & (image->comps[0].h == 2160))){
-                       fprintf(stdout,"Image coordinates %d x %d is not 4K compliant.\nDCI 4K compliance requires that atleast one of coordinates match 4096 x 2160\n",image->comps[0].w,image->comps[0].h);
+               if (!((image->comps[0].w == 4096) | (image->comps[0].h == 2160))){
+                       fprintf(stdout,"Image coordinates %d x %d is not 4K compliant.\nJPEG Digital Cinema Profile-4" 
+                               "(4K profile) compliance requires that at least one of coordinates match 4096 x 2160\n",
+                               image->comps[0].w,image->comps[0].h);
                        parameters->cp_rsiz = STD_RSIZ;
                }
                parameters->numpocs = initialise_4K_poc(parameters->POC,parameters->numresolution);
@@ -541,7 +550,273 @@ void cinema_setup_encoder(opj_cparameters_t *parameters,opj_image_t *image){
 
 /* ------------------------------------------------------------------------------------ */
 
-int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,img_fol_t *img_fol) {
+/**
+Create an index and write it to a file
+@param cstr_info Codestream information 
+@param index Index filename
+@return Returns 0 if successful, returns 1 otherwise
+*/
+int write_index_file(opj_codestream_info_t *cstr_info, char *index) {
+       int tileno, compno, layno, resno, precno, pack_nb, x, y;
+       FILE *stream = NULL;
+       double total_disto = 0;
+/* UniPG>> */
+       int tilepartno;
+
+#ifdef USE_JPWL
+       if (!strcmp(index, JPWL_PRIVATEINDEX_NAME))
+               return 0;
+#endif /* USE_JPWL */
+/* <<UniPG */
+
+       if (!cstr_info)         
+               return 1;
+
+       stream = fopen(index, "w");
+       if (!stream) {
+               fprintf(stderr, "failed to open index file [%s] for writing\n", index);
+               return 1;
+       }
+       
+       fprintf(stream, "%d %d\n", cstr_info->image_w, cstr_info->image_h);
+       fprintf(stream, "%d\n", cstr_info->prog);
+       fprintf(stream, "%d %d\n", cstr_info->tile_x, cstr_info->tile_y);
+       fprintf(stream, "%d %d\n", cstr_info->tw, cstr_info->th);
+       fprintf(stream, "%d\n", cstr_info->comp);
+       fprintf(stream, "%d\n", cstr_info->layer);
+       fprintf(stream, "%d\n", cstr_info->decomposition);
+       
+       for (resno = cstr_info->decomposition; resno >= 0; resno--) {
+               fprintf(stream, "[%d,%d] ", 
+                       (1 << cstr_info->tile[0].pdx[resno]), (1 << cstr_info->tile[0].pdx[resno]));    /* based on tile 0 */
+       }
+       fprintf(stream, "\n");
+/* UniPG>> */
+       fprintf(stream, "%d\n", cstr_info->main_head_start);
+/* <<UniPG */
+       fprintf(stream, "%d\n", cstr_info->main_head_end);
+       fprintf(stream, "%d\n", cstr_info->codestream_size);
+       
+       fprintf(stream, "\nINFO ON TILES\n");
+       fprintf(stream, "tileno start_pos  end_hd  end_tile"
+/* UniPG>> */
+               "   nbparts"
+/* <<UniPG */
+               "         disto     nbpix   disto/nbpix\n");
+       for (tileno = 0; tileno < cstr_info->tw * cstr_info->th; tileno++) {
+               fprintf(stream, "%4d %9d %9d %9d "
+/* UniPG>> */
+                       "%9d "
+/* <<UniPG */
+                       "%9e %9d %9e\n",
+                       cstr_info->tile[tileno].num_tile,
+                       cstr_info->tile[tileno].start_pos,
+                       cstr_info->tile[tileno].end_header,
+                       cstr_info->tile[tileno].end_pos,
+/* UniPG>> */
+                       cstr_info->tile[tileno].num_tps,
+/* <<UniPG */
+                       cstr_info->tile[tileno].distotile, cstr_info->tile[tileno].nbpix,
+                       cstr_info->tile[tileno].distotile / cstr_info->tile[tileno].nbpix);
+       }
+               
+       for (tileno = 0; tileno < cstr_info->tw * cstr_info->th; tileno++) {
+               int start_pos, end_ph_pos, end_pos;
+               double disto = 0;
+               pack_nb = 0;
+
+               fprintf(stream, "\nTILE %d DETAILS\n", tileno); 
+/* UniPG>> */
+               fprintf(stream, "part_nb tileno   pack_nb start_pos end_tph_pos   end_pos\n");
+               for (tilepartno = 0; tilepartno < cstr_info->tile[tileno].num_tps; tilepartno++)
+                       fprintf(stream, "%4d %9d %9d %9d %11d %9d\n",
+                               tilepartno, tileno,
+                               cstr_info->tile[tileno].tp_num[tilepartno],
+                               cstr_info->tile[tileno].tp_start_pos[tilepartno],
+                               cstr_info->tile[tileno].tp_end_header[tilepartno],
+                               cstr_info->tile[tileno].tp_end_pos[tilepartno]
+                               );
+/* <<UniPG */
+               if (cstr_info->prog == LRCP) {  /* LRCP */
+
+                       fprintf(stream, "LRCP\npack_nb tileno layno resno compno precno start_pos end_ph_pos end_pos disto\n");
+
+                       for (layno = 0; layno < cstr_info->layer; layno++) {
+                               for (resno = 0; resno < cstr_info->decomposition + 1; resno++) {
+                                       for (compno = 0; compno < cstr_info->comp; compno++) {
+                                               int prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+                                               for (precno = 0; precno < prec_max; precno++) {
+                                                       start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+                                                       end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+                                                       end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+                                                       disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+                                                       fprintf(stream, "%4d %6d %7d %5d %6d  %6d    %6d     %6d %7d %8e\n",
+                                                               pack_nb, tileno, layno, resno, compno, precno, start_pos, end_ph_pos, end_pos, disto);
+                                                       total_disto += disto;
+                                                       pack_nb++;
+                                               }
+                                       }
+                               }
+                       }
+               } /* LRCP */
+               else if (cstr_info->prog == RLCP) {     /* RLCP */
+
+                       fprintf(stream, "RLCP\npack_nb tileno resno layno compno precno start_pos end_ph_pos end_pos disto\n");
+
+                       for (resno = 0; resno < cstr_info->decomposition + 1; resno++) {
+                               for (layno = 0; layno < cstr_info->layer; layno++) {
+                                       for (compno = 0; compno < cstr_info->comp; compno++) {
+                                               int prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+                                               for (precno = 0; precno < prec_max; precno++) {
+                                                       start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+                                                       end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+                                                       end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+                                                       disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+                                                       fprintf(stream, "%4d %6d %5d %7d %6d %6d %9d   %9d %7d %8e\n",
+                                                               pack_nb, tileno, resno, layno, compno, precno, start_pos, end_ph_pos, end_pos, disto);
+                                                       total_disto += disto;
+                                                       pack_nb++;
+                                               }
+                                       }
+                               }
+                       }
+               } /* RLCP */
+               else if (cstr_info->prog == RPCL) {     /* RPCL */
+
+                       fprintf(stream, "RPCL\npack_nb tileno resno precno compno layno start_pos end_ph_pos end_pos disto\n"); 
+
+                       for (resno = 0; resno < cstr_info->decomposition + 1; resno++) {
+                               /* I suppose components have same XRsiz, YRsiz */
+                               int x0 = cstr_info->tile_Ox + tileno - (int)floor((float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+                               int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+                               int x1 = x0 + cstr_info->tile_x;
+                               int y1 = y0 + cstr_info->tile_y;
+                               for (compno = 0; compno < cstr_info->comp; compno++) {
+                                       int prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+                                       for (precno = 0; precno < prec_max; precno++) {
+                                               int pcnx = cstr_info->tile[tileno].pw[resno];
+                                               int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->decomposition - resno );
+                                               int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->decomposition - resno );
+                                               int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+                                               int precno_y = (int) floor( (float)precno/(float)pcnx );
+                                               for(y = y0; y < y1; y++) {                                                      
+                                                       if (precno_y*pcy == y ) {
+                                                               for (x = x0; x < x1; x++) {                                                                     
+                                                                       if (precno_x*pcx == x ) {
+                                                                               for (layno = 0; layno < cstr_info->layer; layno++) {
+                                                                                       start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+                                                                                       end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+                                                                                       end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+                                                                                       disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+                                                                                       fprintf(stream, "%4d %6d %5d %6d %6d %7d %9d   %9d %7d %8e\n",
+                                                                                               pack_nb, tileno, resno, precno, compno, layno, start_pos, end_ph_pos, end_pos, disto); 
+                                                                                       total_disto += disto;
+                                                                                       pack_nb++; 
+                                                                               }
+                                                                       }
+                                                               }/* x = x0..x1 */
+                                                       } 
+                                               }  /* y = y0..y1 */
+                                       } /* precno */
+                               } /* compno */
+                       } /* resno */
+               } /* RPCL */
+               else if (cstr_info->prog == PCRL) {     /* PCRL */
+                       /* I suppose components have same XRsiz, YRsiz */
+                       int x0 = cstr_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+                       int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+                       int x1 = x0 + cstr_info->tile_x;
+                       int y1 = y0 + cstr_info->tile_y;
+
+                       fprintf(stream, "PCRL\npack_nb tileno precno compno resno layno start_pos end_ph_pos end_pos disto\n"); 
+
+                       for (compno = 0; compno < cstr_info->comp; compno++) {
+                               for (resno = 0; resno < cstr_info->decomposition + 1; resno++) {
+                                       int prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+                                       for (precno = 0; precno < prec_max; precno++) {
+                                               int pcnx = cstr_info->tile[tileno].pw[resno];
+                                               int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->decomposition - resno );
+                                               int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->decomposition - resno );
+                                               int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+                                               int precno_y = (int) floor( (float)precno/(float)pcnx );
+                                               for(y = y0; y < y1; y++) {                                                      
+                                                       if (precno_y*pcy == y ) {
+                                                               for (x = x0; x < x1; x++) {                                                                     
+                                                                       if (precno_x*pcx == x ) {
+                                                                               for (layno = 0; layno < cstr_info->layer; layno++) {
+                                                                                       start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+                                                                                       end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+                                                                                       end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+                                                                                       disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+                                                                                       fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d   %9d %7d %8e\n",
+                                                                                               pack_nb, tileno, precno, compno, resno, layno, start_pos, end_ph_pos, end_pos, disto); 
+                                                                                       total_disto += disto;
+                                                                                       pack_nb++; 
+                                                                               }
+                                                                       }
+                                                               }/* x = x0..x1 */
+                                                       } 
+                                               }  /* y = y0..y1 */
+                                       } /* precno */
+                               } /* resno */
+                       } /* compno */
+               } /* PCRL */
+               else {  /* CPRL */
+
+                       fprintf(stream, "CPRL\npack_nb tileno compno precno resno layno start_pos end_ph_pos end_pos disto\n"); 
+
+                       for (compno = 0; compno < cstr_info->comp; compno++) {
+                               /* I suppose components have same XRsiz, YRsiz */
+                               int x0 = cstr_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tw * cstr_info->tile_x;
+                               int y0 = cstr_info->tile_Ox + (int)floor( (float)tileno/(float)cstr_info->tw ) * cstr_info->tile_y;
+                               int x1 = x0 + cstr_info->tile_x;
+                               int y1 = y0 + cstr_info->tile_y;
+                               
+                               for (resno = 0; resno < cstr_info->decomposition + 1; resno++) {
+                                       int prec_max = cstr_info->tile[tileno].pw[resno] * cstr_info->tile[tileno].ph[resno];
+                                       for (precno = 0; precno < prec_max; precno++) {
+                                               int pcnx = cstr_info->tile[tileno].pw[resno];
+                                               int pcx = (int) pow( 2, cstr_info->tile[tileno].pdx[resno] + cstr_info->decomposition - resno );
+                                               int pcy = (int) pow( 2, cstr_info->tile[tileno].pdy[resno] + cstr_info->decomposition - resno );
+                                               int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
+                                               int precno_y = (int) floor( (float)precno/(float)pcnx );
+                                               for(y = y0; y < y1; y++) {
+                                                       if (precno_y*pcy == y ) {
+                                                               for (x = x0; x < x1; x++) {
+                                                                       if (precno_x*pcx == x ) {
+                                                                               for (layno = 0; layno < cstr_info->layer; layno++) {
+                                                                                       start_pos = cstr_info->tile[tileno].packet[pack_nb].start_pos;
+                                                                                       end_ph_pos = cstr_info->tile[tileno].packet[pack_nb].end_ph_pos;
+                                                                                       end_pos = cstr_info->tile[tileno].packet[pack_nb].end_pos;
+                                                                                       disto = cstr_info->tile[tileno].packet[pack_nb].disto;
+                                                                                       fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d   %9d %7d %8e\n",
+                                                                                               pack_nb, tileno, compno, precno, resno, layno, start_pos, end_ph_pos, end_pos, disto); 
+                                                                                       total_disto += disto;
+                                                                                       pack_nb++; 
+                                                                               }
+                                                                       }
+                                                               }/* x = x0..x1 */
+                                                       }
+                                               } /* y = y0..y1 */
+                                       } /* precno */
+                               } /* resno */
+                       } /* compno */
+               } /* CPRL */   
+       } /* tileno */
+       
+       fprintf(stream, "%8e\n", cstr_info->D_max); /* SE max */
+       fprintf(stream, "%.8e\n", total_disto); /* SE totale */
+       fclose(stream);
+
+       fprintf(stderr,"Generated index file %s\n", index);
+
+       return 0;
+}
+
+/* ------------------------------------------------------------------------------------ */
+
+int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,
+                                                                                                       img_fol_t *img_fol, raw_cparameters_t *raw_cp) {
        int i, j,totlen;
        option_t long_option[]={
                {"cinema2K",REQ_ARG, NULL ,'w'},
@@ -555,8 +830,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
        };
 
        /* parse the command line */
-/* UniPG>> */
-       const char optlist[] = "i:o:hr:q:n:b:c:t:p:s:SEM:x:R:d:T:If:P:C:"
+       const char optlist[] = "i:o:hr:q:n:b:c:t:p:s:SEM:x:R:d:T:If:P:C:F:"
 #ifdef USE_JPWL
                "W:"
 #endif /* USE_JPWL */
@@ -564,10 +838,10 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
 
        totlen=sizeof(long_option);
        img_fol->set_out_format=0;
+       raw_cp->rawWidth = 0;
 
        while (1) {
     int c = getopt_long(argc, argv, optlist,long_option,totlen);
-/* <<UniPG */
                if (c == -1)
                        break;
                switch (c) {
@@ -580,11 +854,13 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                        case PXM_DFMT:
                                        case BMP_DFMT:
                                        case TIF_DFMT:
+                                       case RAW_DFMT:
+                                       case TGA_DFMT:
                                                break;
                                        default:
                                                fprintf(stderr,
                                                        "!! Unrecognized format for infile : %s "
-              "[accept only *.pnm, *.pgm, *.ppm, *.pgx, *.bmp or *.tif] !!\n\n", 
+              "[accept only *.pnm, *.pgm, *.ppm, *.pgx, *.bmp, *.tif, *.raw or *.tga] !!\n\n", 
                                                        infile);
                                                return 1;
                                }
@@ -603,7 +879,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                        case JP2_CFMT:
                                                break;
                                        default:
-                                               fprintf(stderr, "Unknown output format image %s [only *.j2k, *.jp2]!! \n", outfile);
+                                               fprintf(stderr, "Unknown output format image %s [only *.j2k, *.j2c or *.jp2]!! \n", outfile);
                                                return 1;
                                }
                                strncpy(parameters->outfile, outfile, sizeof(parameters->outfile)-1);
@@ -619,15 +895,13 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                        img_fol->set_out_format = 1;
                                        parameters->cod_format = get_file_format(outformat);
                                        switch(parameters->cod_format) {
-                       case J2K_CFMT:
-                               img_fol->out_format = "j2k";
-                               break;
-                       case JP2_CFMT:
-                               img_fol->out_format = "jp2";
-                               break;
-                       default:
-                               fprintf(stderr, "Unknown output format image [only j2k, jp2]!! \n");
-                               return 1;
+                                               case J2K_CFMT:
+                                               case JP2_CFMT:
+                                                       img_fol->out_format = optarg;
+                                                       break;
+                                               default:
+                                                       fprintf(stderr, "Unknown output format image [only j2k, j2c, jp2]!! \n");
+                                                       return 1;
                                        }
                                }
                                break;
@@ -654,6 +928,41 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
 
                                /* ----------------------------------------------------- */
 
+                       
+                       case 'F':                       /* Raw image format parameters */
+                       {
+                               char signo;
+                               char *s = optarg;
+                               if (sscanf(s, "%d,%d,%d,%d,%c", &raw_cp->rawWidth, &raw_cp->rawHeight, &raw_cp->rawComp, &raw_cp->rawBitDepth, &signo) == 5) {
+                                       if (signo == 's') {
+                                               raw_cp->rawSigned = true;
+                                               fprintf(stdout,"\nRaw file parameters: %d,%d,%d,%d Signed\n", raw_cp->rawWidth, raw_cp->rawHeight, raw_cp->rawComp, raw_cp->rawBitDepth);
+                                       }
+                                       else if (signo == 'u') {
+                                               raw_cp->rawSigned = false;
+                                               fprintf(stdout,"\nRaw file parameters: %d,%d,%d,%d Unsigned\n", raw_cp->rawWidth, raw_cp->rawHeight, raw_cp->rawComp, raw_cp->rawBitDepth);
+                                       }
+                                       else {
+                                               fprintf(stderr,"\nError: invalid raw image parameters: Unknown sign of raw file\n");
+                                               fprintf(stderr,"Please use the Format option -F:\n");
+                                               fprintf(stderr,"-F rawWidth,rawHeight,rawComp,rawBitDepth,s/u (Signed/Unsigned)\n");
+                                               fprintf(stderr,"Example: -i lena.raw -o lena.j2k -F 512,512,3,8,u\n");
+                                               fprintf(stderr,"Aborting\n");
+                                       }                                       
+                               }
+                               else {
+                                       fprintf(stderr,"\nError: invalid raw image parameters\n");
+                                       fprintf(stderr,"Please use the Format option -F:\n");
+                                       fprintf(stderr,"-F rawWidth,rawHeight,rawComp,rawBitDepth,s/u (Signed/Unsigned)\n");
+                                               fprintf(stderr,"Example: -i lena.raw -o lena.j2k -F 512,512,3,8,u\n");
+                                       fprintf(stderr,"Aborting\n");
+                                       return 1;
+                               }
+                       }
+                       break;
+
+                               /* ----------------------------------------------------- */
+
                        case 'q':                       /* add fixed_quality */
                        {
                                char *s = optarg;
@@ -1024,11 +1333,11 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                        /* Tile part header, specified */
                                                        if (!((hprot == 0) || (hprot == 1) || (hprot == 16) || (hprot == 32) ||
                                                                ((hprot >= 37) && (hprot <= 128)))) {
-                                                               fprintf(stderr, "ERROR -> invalid tile header protection method h = %d\n", hprot);
+                                                               fprintf(stderr, "ERROR -> invalid tile part header protection method h = %d\n", hprot);
                                                                return 1;
                                                        }
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method t = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method t = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (tilespec < JPWL_MAX_NO_TILESPECS) {
@@ -1039,7 +1348,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                } else if(sscanf(token, "h%d", &tile) == 1) {
                                                        /* Tile part header, unspecified */
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method t = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method t = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (tilespec < JPWL_MAX_NO_TILESPECS) {
@@ -1085,7 +1394,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                                return 1;
                                                        }
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method p = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method p = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (packspec < JPWL_MAX_NO_PACKSPECS) {
@@ -1102,7 +1411,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                                return 1;
                                                        }
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method p = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method p = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (pack < 0) {
@@ -1123,7 +1432,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                                return 1;
                                                        }
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method p = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method p = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (pack < 0) {
@@ -1139,7 +1448,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                } else if (sscanf(token, "p%d", &tile) == 1) {
                                                        /* default from a tile on */
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on protection method p = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on protection method p = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (packspec < JPWL_MAX_NO_PACKSPECS) {
@@ -1180,11 +1489,11 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                } else if(sscanf(token, "s%d=%d", &tile, &sens) == 2) {
                                                        /* Tile part header, specified */
                                                        if ((sens < -1) || (sens > 7)) {
-                                                               fprintf(stderr, "ERROR -> invalid tile header sensitivity method s = %d\n", sens);
+                                                               fprintf(stderr, "ERROR -> invalid tile part header sensitivity method s = %d\n", sens);
                                                                return 1;
                                                        }
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on sensitivity method t = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on sensitivity method t = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (tilespec < JPWL_MAX_NO_TILESPECS) {
@@ -1195,7 +1504,7 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                                                } else if(sscanf(token, "s%d", &tile) == 1) {
                                                        /* Tile part header, unspecified */
                                                        if (tile < 0) {
-                                                               fprintf(stderr, "ERROR -> invalid tile number on sensitivity method t = %d\n", tile);
+                                                               fprintf(stderr, "ERROR -> invalid tile part number on sensitivity method t = %d\n", tile);
                                                                return 1;
                                                        }
                                                        if (tilespec < JPWL_MAX_NO_TILESPECS) {
@@ -1346,6 +1655,15 @@ int parse_cmdline_encoder(int argc, char **argv, opj_cparameters_t *parameters,i
                }
        }
 
+       if (parameters->decod_format == RAW_DFMT && raw_cp->rawWidth == 0) {
+                       fprintf(stderr,"\nError: invalid raw image parameters\n");
+                       fprintf(stderr,"Please use the Format option -F:\n");
+                       fprintf(stderr,"-F rawWidth,rawHeight,rawComp,rawBitDepth,s/u (Signed/Unsigned)\n");
+                                               fprintf(stderr,"Example: -i lena.raw -o lena.j2k -F 512,512,3,8,u\n");
+                       fprintf(stderr,"Aborting\n");
+                       return 1;
+       }
+
        if ((parameters->cp_disto_alloc || parameters->cp_fixed_alloc || parameters->cp_fixed_quality)
                && (!(parameters->cp_disto_alloc ^ parameters->cp_fixed_alloc ^ parameters->cp_fixed_quality))) {
                fprintf(stderr, "Error: options -r -q and -f cannot be used together !!\n");
@@ -1412,6 +1730,8 @@ int main(int argc, char **argv) {
        int i,num_images;
        int imageno;
        dircnt_t *dirptr;
+       raw_cparameters_t raw_cp;
+       opj_codestream_info_t cstr_info;
 
        /*
        configure the event callbacks (not required)
@@ -1425,15 +1745,17 @@ int main(int argc, char **argv) {
        /* set encoding parameters to default values */
        opj_set_default_encoder_parameters(&parameters);
 
+       /* need to initialize img_fol since parameters will be read in parse_cmdline_decoder */
+       memset(&img_fol,0,sizeof(img_fol_t));
+
        /* parse input and get user encoding parameters */
-       if(parse_cmdline_encoder(argc, argv, &parameters,&img_fol) == 1) {
+       if(parse_cmdline_encoder(argc, argv, &parameters,&img_fol, &raw_cp) == 1) {
                return 0;
        }
        
        if (parameters.cp_cinema){
                cinema_parameters(&parameters);
-       }
-                               
+       }                               
 
        /* Create comment for codestream */
        if(parameters.cp_comment == NULL) {
@@ -1449,19 +1771,15 @@ int main(int argc, char **argv) {
                sprintf(parameters.cp_comment,"%s%s", comment, version);
 #endif
 /* <<UniPG */
-
        }
 
        /* Read directory if necessary */
-
        if(img_fol.set_imgdir==1){
                num_images=get_num_images(img_fol.imgdirpath);
-
                dirptr=(dircnt_t*)malloc(sizeof(dircnt_t));
                if(dirptr){
                        dirptr->filename_buf = (char*)malloc(num_images*OPJ_PATH_LEN*sizeof(char));     // Stores at max 10 image file names
                        dirptr->filename = (char**) malloc(num_images*sizeof(char*));
-
                        if(!dirptr->filename_buf){
                                return 0;
                        }
@@ -1480,13 +1798,10 @@ int main(int argc, char **argv) {
                num_images=1;
        }
        /*Encoding image one by one*/
-       for(imageno=0;imageno<num_images;imageno++)
-       {
-
+       for(imageno=0;imageno<num_images;imageno++)     {
                image = NULL;
                fprintf(stderr,"\n");
                
-
                if(img_fol.set_imgdir==1){
                        if (get_next_file(imageno, dirptr,&img_fol, &parameters)) {
                                fprintf(stderr,"skipping file...\n");
@@ -1502,7 +1817,10 @@ int main(int argc, char **argv) {
                                break;
                        case TIF_DFMT:
                                break;
-               
+                       case RAW_DFMT:
+                               break;
+                       case TGA_DFMT:
+                               break;
                        default:
                                fprintf(stderr,"skipping file...\n");
                                continue;                       
@@ -1543,7 +1861,25 @@ int main(int argc, char **argv) {
                                                return 1;
                                        }
                                break;
+
+                               case RAW_DFMT:
+                                       image = rawtoimage(parameters.infile, &parameters, &raw_cp);
+                                       if (!image) {
+                                               fprintf(stderr, "Unable to load raw file\n");
+                                               return 1;
+                                       }
+                               break;
+
+                               case TGA_DFMT:
+                                       image = tgatoimage(parameters.infile, &parameters);
+                                       if (!image) {
+                                               fprintf(stderr, "Unable to load tga file\n");
+                                               return 1;
+                                       }
+                               break;
                }
+                       /* Decide if MCT should be used */
+                       parameters.tcp_mct = image->numcomps == 3 ? 1 : 0;
 
                        if(parameters.cp_cinema){
                                cinema_setup_encoder(&parameters,image);
@@ -1571,7 +1907,7 @@ int main(int argc, char **argv) {
                                cio = opj_cio_open((opj_common_ptr)cinfo, NULL, 0);
 
                                /* encode the image */
-                               bSuccess = opj_encode(cinfo, cio, image, parameters.index);
+                               bSuccess = opj_encode(cinfo, cio, image, &cstr_info);
                                if (!bSuccess) {
                                        opj_cio_close(cio);
                                        fprintf(stderr, "failed to encode image\n");
@@ -1592,9 +1928,16 @@ int main(int argc, char **argv) {
                                /* close and free the byte stream */
                                opj_cio_close(cio);
 
+                               /* Write the index to disk */
+                               if (parameters.index_on) {
+                                       bSuccess = write_index_file(&cstr_info, parameters.index);
+                                       if (bSuccess) {
+                                               fprintf(stderr, "Failed to output index file\n");
+                                       }
+                               }
+
                                /* free remaining compression structures */
                                opj_destroy_compress(cinfo);
-
                        } else {                        /* JP2 format output */
                                int codestream_length;
                                opj_cio_t *cio = NULL;
@@ -1614,7 +1957,7 @@ int main(int argc, char **argv) {
                                cio = opj_cio_open((opj_common_ptr)cinfo, NULL, 0);
 
                                /* encode the image */
-                               bSuccess = opj_encode(cinfo, cio, image, parameters.index);
+                               bSuccess = opj_encode(cinfo, cio, image, &cstr_info);
                                if (!bSuccess) {
                                        opj_cio_close(cio);
                                        fprintf(stderr, "failed to encode image\n");
@@ -1633,6 +1976,14 @@ int main(int argc, char **argv) {
                                fprintf(stderr,"Generated outfile %s\n",parameters.outfile);
                                /* close and free the byte stream */
                                opj_cio_close(cio);
+                               
+                               /* Write the index to disk */
+                               if (parameters.index_on) {
+                                       bSuccess = write_index_file(&cstr_info, parameters.index);
+                                       if (bSuccess) {
+                                               fprintf(stderr, "Failed to output index file\n");
+                                       }
+                               }
 
                                /* free remaining compression structures */
                                opj_destroy_compress(cinfo);
@@ -1649,4 +2000,3 @@ int main(int argc, char **argv) {
 
        return 0;
 }
-