Reformat whole codebase with astyle.options (#128)
[openjpeg.git] / src / lib / openjp3d / jp3d.c
index f445fb36d9a81d58aef649a48adff451af622799..8d9a73db5da3fb7984d324a236fb28a5ae9965c4 100644 (file)
@@ -1,6 +1,6 @@
 /*
- * The copyright in this software is being made available under the 2-clauses 
- * BSD License, included below. This software may be subject to other third 
+ * The copyright in this software is being made available under the 2-clauses
+ * BSD License, included below. This software may be subject to other third
  * party and contributor rights, including patent rights, and no such rights
  * are granted under this license.
  *
@@ -321,1661 +321,1810 @@ static void j3d_read_nlt(opj_j3d_t *j3d);
 
 /* ----------------------------------------------------------------------- */
 
-static void j3d_dump_volume(FILE *fd, opj_volume_t * vol) {
-       int compno;
-       fprintf(fd, "volume {\n");
-       fprintf(fd, "  x0=%d, y0=%d, z0=%d, x1=%d, y1=%d, z1=%d\n", vol->x0, vol->y0, vol->z0,vol->x1, vol->y1,  vol->z1);
-       fprintf(fd, "  numcomps=%d\n", vol->numcomps);
-       for (compno = 0; compno < vol->numcomps; compno++) {
-               opj_volume_comp_t *comp = &vol->comps[compno];
-               fprintf(fd, "  comp %d {\n", compno);
-               fprintf(fd, "    dx=%d, dy=%d, dz=%d\n", comp->dx, comp->dy, comp->dz);
-               fprintf(fd, "    prec=%d\n", comp->prec);
-               fprintf(fd, "    sgnd=%d\n", comp->sgnd);
-               fprintf(fd, "  }\n");
-       }
-       fprintf(fd, "}\n");
-}
-
-static void j3d_dump_cp(FILE *fd, opj_volume_t * vol, opj_cp_t * cp) {
-       int tileno, compno, layno, bandno, resno, numbands;
-       fprintf(fd, "coding parameters {\n");
-       fprintf(fd, "  tx0=%d, ty0=%d, tz0=%d\n", cp->tx0, cp->ty0, cp->tz0);
-       fprintf(fd, "  tdx=%d, tdy=%d, tdz=%d\n", cp->tdx, cp->tdy, cp->tdz);
-       fprintf(fd, "  tw=%d, th=%d, tl=%d\n", cp->tw, cp->th, cp->tl);
-       fprintf(fd, "  transform format: %d\n", cp->transform_format);
-       fprintf(fd, "  encoding format: %d\n", cp->encoding_format);
-       for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
-               opj_tcp_t *tcp = &cp->tcps[tileno];
-               fprintf(fd, "  tile %d {\n", tileno);
-               fprintf(fd, "    csty=%x\n", tcp->csty);
-               fprintf(fd, "    prg=%d\n", tcp->prg);
-               fprintf(fd, "    numlayers=%d\n", tcp->numlayers);
-               fprintf(fd, "    mct=%d\n", tcp->mct);
-               fprintf(fd, "    rates=");
-               for (layno = 0; layno < tcp->numlayers; layno++) {
-                       fprintf(fd, "%f ", tcp->rates[layno]);
-               }
-               fprintf(fd, "\n");
-               fprintf(fd, "    first=%d\n", tcp->first);
-               for (compno = 0; compno < vol->numcomps; compno++) {
-                       opj_tccp_t *tccp = &tcp->tccps[compno];
-                       fprintf(fd, "    comp %d {\n", compno);
-                       fprintf(fd, "      csty=%x\n", tccp->csty);
-                       fprintf(fd, "      numresx=%d, numresy=%d, numresz=%d\n", tccp->numresolution[0], tccp->numresolution[1], tccp->numresolution[2]);
-                       fprintf(fd, "      cblkw=%d, cblkh=%d, cblkl=%d\n", tccp->cblk[0], tccp->cblk[1], tccp->cblk[2]);
-                       fprintf(fd, "      cblksty=%x\n", tccp->cblksty);
-                       fprintf(fd, "      qntsty=%d\n", tccp->qntsty);
-                       fprintf(fd, "      numgbits=%d\n", tccp->numgbits);
-                       fprintf(fd, "      roishift=%d\n", tccp->roishift);
-                       fprintf(fd, "      reversible=%d\n", tccp->reversible);
-                       fprintf(fd, "      dwtidx=%d dwtidy=%d dwtidz=%d\n", tccp->dwtid[0], tccp->dwtid[1], tccp->dwtid[2]);
-                       if (tccp->atk != NULL) {
+static void j3d_dump_volume(FILE *fd, opj_volume_t * vol)
+{
+    int compno;
+    fprintf(fd, "volume {\n");
+    fprintf(fd, "  x0=%d, y0=%d, z0=%d, x1=%d, y1=%d, z1=%d\n", vol->x0, vol->y0,
+            vol->z0, vol->x1, vol->y1,  vol->z1);
+    fprintf(fd, "  numcomps=%d\n", vol->numcomps);
+    for (compno = 0; compno < vol->numcomps; compno++) {
+        opj_volume_comp_t *comp = &vol->comps[compno];
+        fprintf(fd, "  comp %d {\n", compno);
+        fprintf(fd, "    dx=%d, dy=%d, dz=%d\n", comp->dx, comp->dy, comp->dz);
+        fprintf(fd, "    prec=%d\n", comp->prec);
+        fprintf(fd, "    sgnd=%d\n", comp->sgnd);
+        fprintf(fd, "  }\n");
+    }
+    fprintf(fd, "}\n");
+}
+
+static void j3d_dump_cp(FILE *fd, opj_volume_t * vol, opj_cp_t * cp)
+{
+    int tileno, compno, layno, bandno, resno, numbands;
+    fprintf(fd, "coding parameters {\n");
+    fprintf(fd, "  tx0=%d, ty0=%d, tz0=%d\n", cp->tx0, cp->ty0, cp->tz0);
+    fprintf(fd, "  tdx=%d, tdy=%d, tdz=%d\n", cp->tdx, cp->tdy, cp->tdz);
+    fprintf(fd, "  tw=%d, th=%d, tl=%d\n", cp->tw, cp->th, cp->tl);
+    fprintf(fd, "  transform format: %d\n", cp->transform_format);
+    fprintf(fd, "  encoding format: %d\n", cp->encoding_format);
+    for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
+        opj_tcp_t *tcp = &cp->tcps[tileno];
+        fprintf(fd, "  tile %d {\n", tileno);
+        fprintf(fd, "    csty=%x\n", tcp->csty);
+        fprintf(fd, "    prg=%d\n", tcp->prg);
+        fprintf(fd, "    numlayers=%d\n", tcp->numlayers);
+        fprintf(fd, "    mct=%d\n", tcp->mct);
+        fprintf(fd, "    rates=");
+        for (layno = 0; layno < tcp->numlayers; layno++) {
+            fprintf(fd, "%f ", tcp->rates[layno]);
+        }
+        fprintf(fd, "\n");
+        fprintf(fd, "    first=%d\n", tcp->first);
+        for (compno = 0; compno < vol->numcomps; compno++) {
+            opj_tccp_t *tccp = &tcp->tccps[compno];
+            fprintf(fd, "    comp %d {\n", compno);
+            fprintf(fd, "      csty=%x\n", tccp->csty);
+            fprintf(fd, "      numresx=%d, numresy=%d, numresz=%d\n",
+                    tccp->numresolution[0], tccp->numresolution[1], tccp->numresolution[2]);
+            fprintf(fd, "      cblkw=%d, cblkh=%d, cblkl=%d\n", tccp->cblk[0],
+                    tccp->cblk[1], tccp->cblk[2]);
+            fprintf(fd, "      cblksty=%x\n", tccp->cblksty);
+            fprintf(fd, "      qntsty=%d\n", tccp->qntsty);
+            fprintf(fd, "      numgbits=%d\n", tccp->numgbits);
+            fprintf(fd, "      roishift=%d\n", tccp->roishift);
+            fprintf(fd, "      reversible=%d\n", tccp->reversible);
+            fprintf(fd, "      dwtidx=%d dwtidy=%d dwtidz=%d\n", tccp->dwtid[0],
+                    tccp->dwtid[1], tccp->dwtid[2]);
+            if (tccp->atk != NULL) {
                 fprintf(fd, "      atk.index=%d\n", tccp->atk->index);
-                               fprintf(fd, "      atk.coeff_typ=%d\n", tccp->atk->coeff_typ);
-                               fprintf(fd, "      atk.filt_cat=%d\n", tccp->atk->filt_cat);
-                               fprintf(fd, "      atk.exten=%d\n", tccp->atk->exten);
-                               fprintf(fd, "      atk.minit=%d\n", tccp->atk->minit);
-                               fprintf(fd, "      atk.wt_typ=%d\n", tccp->atk->wt_typ);
-                       }
-                       fprintf(fd, "      stepsizes of bands=");
+                fprintf(fd, "      atk.coeff_typ=%d\n", tccp->atk->coeff_typ);
+                fprintf(fd, "      atk.filt_cat=%d\n", tccp->atk->filt_cat);
+                fprintf(fd, "      atk.exten=%d\n", tccp->atk->exten);
+                fprintf(fd, "      atk.minit=%d\n", tccp->atk->minit);
+                fprintf(fd, "      atk.wt_typ=%d\n", tccp->atk->wt_typ);
+            }
+            fprintf(fd, "      stepsizes of bands=");
             numbands = (tccp->qntsty == J3D_CCP_QNTSTY_SIQNT) ? 1 :
-                       ( (cp->transform_format == TRF_2D_DWT) ? (tccp->numresolution[0] * 3 - 2) :
-                               (tccp->numresolution[0] * 7 - 6) - 4 *(tccp->numresolution[0] - tccp->numresolution[2]) );
-                       for (bandno = 0; bandno < numbands; bandno++) {
-                               fprintf(fd, "(%d,%d) ", tccp->stepsizes[bandno].mant,tccp->stepsizes[bandno].expn);
-                       }
-                       fprintf(fd, "\n");
-                       
-                       if (tccp->csty & J3D_CCP_CSTY_PRT) {
-                               fprintf(fd, "      prcw=");
-                               for (resno = 0; resno < tccp->numresolution[0]; resno++) {
-                                       fprintf(fd, "%d ", tccp->prctsiz[0][resno]);
-                               }
-                               fprintf(fd, "\n");
-                               fprintf(fd, "      prch=");
-                               for (resno = 0; resno < tccp->numresolution[0]; resno++) {
-                                       fprintf(fd, "%d ", tccp->prctsiz[1][resno]);
-                               }
-                               fprintf(fd, "\n");
-                               fprintf(fd, "      prcl=");
-                               for (resno = 0; resno < tccp->numresolution[0]; resno++) {
-                                       fprintf(fd, "%d ", tccp->prctsiz[2][resno]);
-                               }
-                               fprintf(fd, "\n");
-                       }
-                       fprintf(fd, "    }\n");
-               }
-               fprintf(fd, "  }\n");
-       }
-       fprintf(fd, "}\n");
-}
-
-/* ----------------------------------------------------------------------- 
+                       ((cp->transform_format == TRF_2D_DWT) ? (tccp->numresolution[0] * 3 - 2) :
+                        (tccp->numresolution[0] * 7 - 6) - 4 * (tccp->numresolution[0] -
+                                tccp->numresolution[2]));
+            for (bandno = 0; bandno < numbands; bandno++) {
+                fprintf(fd, "(%d,%d) ", tccp->stepsizes[bandno].mant,
+                        tccp->stepsizes[bandno].expn);
+            }
+            fprintf(fd, "\n");
+
+            if (tccp->csty & J3D_CCP_CSTY_PRT) {
+                fprintf(fd, "      prcw=");
+                for (resno = 0; resno < tccp->numresolution[0]; resno++) {
+                    fprintf(fd, "%d ", tccp->prctsiz[0][resno]);
+                }
+                fprintf(fd, "\n");
+                fprintf(fd, "      prch=");
+                for (resno = 0; resno < tccp->numresolution[0]; resno++) {
+                    fprintf(fd, "%d ", tccp->prctsiz[1][resno]);
+                }
+                fprintf(fd, "\n");
+                fprintf(fd, "      prcl=");
+                for (resno = 0; resno < tccp->numresolution[0]; resno++) {
+                    fprintf(fd, "%d ", tccp->prctsiz[2][resno]);
+                }
+                fprintf(fd, "\n");
+            }
+            fprintf(fd, "    }\n");
+        }
+        fprintf(fd, "  }\n");
+    }
+    fprintf(fd, "}\n");
+}
+
+/* -----------------------------------------------------------------------
 Extended capabilities
 ------------------------------------------------------------------------*/
 
-static void j3d_write_cap(opj_j3d_t *j3d){
-       int len,lenp;
+static void j3d_write_cap(opj_j3d_t *j3d)
+{
+    int len, lenp;
+
+    opj_cio_t *cio = j3d->cio;
+    cio_write(cio, J3D_MS_CAP, 2);  /* CAP */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, J3D_CAP_10, 4);
+    if (J3D_CAP_10) {
+        cio_write(cio, 0x0, 2);
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Lsiz */
+    cio_seek(cio, lenp + len);
+
+}
+static void j3d_read_cap(opj_j3d_t *j3d)
+{
+    int len, Cap;
+    opj_cio_t *cio = j3d->cio;
+    /*cio_read(cio, 2);  CAP */
+    len = cio_read(cio, 2);
+    Cap = cio_read(cio, 4);
+    if (Cap) {
+        cio_read(cio, 2);
+    }
+    assert(len == 2 + 4 + 2);
+}
+static void j3d_write_nsi(opj_j3d_t *j3d)
+{
+    int i;
+    int lenp, len;
+    int ndim = 3;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    cio_write(cio, J3D_MS_NSI, 2);  /* NSI */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, ndim, 1);    /* Ndim */
+    cio_write(cio, volume->z1, 4);  /* Zsiz */
+    cio_write(cio, volume->z0, 4);  /* Z0siz */
+    cio_write(cio, cp->tdz, 4);     /* ZTsiz */
+    cio_write(cio, cp->tz0, 4);     /* ZT0siz */
+    for (i = 0; i < volume->numcomps; i++) {
+        cio_write(cio, volume->comps[i].dz, 1); /* ZRsiz_i */
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Lsiz */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_nsi(opj_j3d_t *j3d)
+{
+    int ndim;
+    int len, i;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    len = cio_read(cio, 2);         /* Lnsi */
+    ndim = cio_read(cio, 1);            /* Ndim */
+    assert(ndim == 3);
+    volume->z1 = cio_read(cio, 4);  /* Zsiz */
+    volume->z0 = cio_read(cio, 4);  /* Z0siz */
+    cp->tdz = cio_read(cio, 4);     /* ZTsiz */
+    cp->tz0 = cio_read(cio, 4);     /* ZT0siz */
+    for (i = 0; i < volume->numcomps; i++) {
+        volume->comps[i].dz = cio_read(cio, 1); /* ZRsiz_i */
+    }
 
-       opj_cio_t *cio = j3d->cio;
-       cio_write(cio, J3D_MS_CAP, 2);  /* CAP */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio,J3D_CAP_10, 4); 
-  if( J3D_CAP_10 )
-    {
-    cio_write(cio, 0x0, 2); 
-    }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Lsiz */
-       cio_seek(cio, lenp + len);
-
-}
-static void j3d_read_cap(opj_j3d_t *j3d){
-       int len, Cap;
-       opj_cio_t *cio = j3d->cio;
-       /*cio_read(cio, 2);      CAP */
-       len = cio_read(cio, 2);
-       Cap = cio_read(cio, 4);
-  if(Cap) {
-    cio_read(cio, 2);
-  }
-  assert( len == 2 + 4 + 2 );
-}
-static void j3d_write_nsi(opj_j3d_t *j3d) {
-       int i;
-       int lenp, len;
-  int ndim = 3;
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       cio_write(cio, J3D_MS_NSI, 2);  /* NSI */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio, ndim, 1);        /* Ndim */
-       cio_write(cio, volume->z1, 4);  /* Zsiz */
-       cio_write(cio, volume->z0, 4);  /* Z0siz */
-       cio_write(cio, cp->tdz, 4);             /* ZTsiz */
-       cio_write(cio, cp->tz0, 4);             /* ZT0siz */
-       for (i = 0; i < volume->numcomps; i++) {
-               cio_write(cio, volume->comps[i].dz, 1); /* ZRsiz_i */
-       }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Lsiz */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_nsi(opj_j3d_t *j3d) {
-  int ndim;
-       int len, i;
-       
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       len = cio_read(cio, 2);                 /* Lnsi */
-       ndim = cio_read(cio, 1);                        /* Ndim */
-  assert( ndim == 3 );
-       volume->z1 = cio_read(cio, 4);  /* Zsiz */
-       volume->z0 = cio_read(cio, 4);  /* Z0siz */
-       cp->tdz = cio_read(cio, 4);             /* ZTsiz */
-       cp->tz0 = cio_read(cio, 4);             /* ZT0siz */
-       for (i = 0; i < volume->numcomps; i++) {
-               volume->comps[i].dz = cio_read(cio, 1); /* ZRsiz_i */
-       }
-       
-       /*Initialization of volume*/
-       cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
-       cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
-       cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
-       cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(opj_tcp_t));
-       cp->tileno = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
-       cp->tileno_size = 0;
-       
-       for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
-               cp->tcps[i].POC = 0;
-               cp->tcps[i].numpocs = 0;
-               cp->tcps[i].first = 1;
-       }
-       
-       /* Initialization for PPM marker (Packets header)*/
-       cp->ppm = 0;
-       cp->ppm_data = NULL;
-       cp->ppm_data_first = NULL;
-       cp->ppm_previous = 0;
-       cp->ppm_store = 0;
-       
-       j3d->default_tcp->tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) * volume->numcomps);
-       for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
-               cp->tcps[i].tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) * volume->numcomps);
-       }
-       j3d->tile_data = (unsigned char **) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(unsigned char *));
-       j3d->tile_len = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
-       j3d->state = J3D_STATE_MH;
-       
-}
-static void j3d_write_dco(opj_j3d_t *j3d){
-       int lenp, len, i;
-       int dcotype;    
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       dcotype = 1; /* Offsets are 16bit signed integers Table A21 15444-2 */
-       cio_write(cio, J3D_MS_DCO, 2);  /* DCO */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio, dcotype, 1);     
-       if (dcotype == 0) {
-               for (i = 0; i < volume->numcomps; i++) 
-                       cio_write(cio, volume->comps[i].dcoffset, 1);   /* SPdco_i */
-       } else if (dcotype == 1) {
-               for (i = 0; i < volume->numcomps; i++){ 
-                       cio_write(cio, volume->comps[i].dcoffset, 1);   /* SPdco_i */
-                       opj_event_msg(j3d->cinfo, EVT_INFO, "dcotype %d DCO %d \n",dcotype,volume->comps[i].dcoffset);
-               }
-       }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Ldco */
-       cio_seek(cio, lenp + len);
-
-}
-static void j3d_read_dco(opj_j3d_t *j3d){
-       int len, i;
-       int dcotype;
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       len = cio_read(cio, 2);                 /* Lsiz */
-       dcotype = cio_read(cio, 1); /*offset 8bit unsigned / 16bit signed integers*/
-       if (dcotype == 0) {
-               for (i = 0; i < volume->numcomps; i++) {
-                       volume->comps[i].dcoffset = cio_read(cio, 1);
-                       if (volume->comps[i].dcoffset > 128) 
-                               volume->comps[i].dcoffset = volume->comps[i].dcoffset - 256;
-               }
-       } else if (dcotype == 1) {
-               for (i = 0; i < volume->numcomps; i++) {
-                       volume->comps[i].dcoffset = cio_read(cio, 1);
-                       if (volume->comps[i].dcoffset > 128) 
-                               volume->comps[i].dcoffset = volume->comps[i].dcoffset - 256;
-               }
-       }
-       
-}
-static void j3d_write_atk(opj_j3d_t *j3d){
-       int lenp, len, s, k;
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_atk_t *atk = j3d->cp->tcps->tccps->atk;
-       
-       cio_write(cio, J3D_MS_ATK, 2);  /* ATK */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);                               
-       cio_write(cio, atk->index + (atk->coeff_typ << 8) + (atk->filt_cat << 11) 
-               + (atk->wt_typ << 12) + (atk->minit << 13) + (atk->exten << 14), 2);                    /* Satk */
-    if (atk->wt_typ == J3D_ATK_IRR) 
-               cio_write(cio,(unsigned int) (atk->Katk * 8192.0), 1 << atk->coeff_typ);
-       cio_write(cio, atk->Natk, 1);
-       for (s = 0; s < atk->Natk; s++){
-               if (atk->filt_cat == J3D_ATK_ARB) 
-                       cio_write(cio, atk->Oatk[s], 1);
-               if (atk->wt_typ == J3D_ATK_REV){
-                       cio_write(cio, atk->Eatk[s], 1);
-                       cio_write(cio, atk->Batk[s], 1);
-               }
-               cio_write(cio, atk->LCatk[s], 1);
-               for (k = 0; k < atk->LCatk[s]; k++)
-                       cio_write(cio,(unsigned int) (atk->Aatk[s][k] * 8192.0), 1 << atk->coeff_typ);
-       }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Latk */
-       cio_seek(cio, lenp + len);
-}
-static void j3d_read_atk(opj_j3d_t *j3d){
-       int len, i, Satk, k;
-       
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       opj_atk_t *atk = cp->tcps->tccps->atk; 
-       
-       len = cio_read(cio, 2);                 /* Latk */
-       Satk = cio_read(cio, 2); 
-       atk->index = Satk & 0x00ff;
-       atk->coeff_typ = Satk >> 8 & 0x0007;
-       atk->filt_cat = Satk >> 11 & 0x0001;
-       atk->wt_typ = Satk >> 12  & 0x0001;
-       atk->minit = Satk >> 13 & 0x0001;
-       atk->exten = Satk >> 14 & 0x0001;
-    if (atk->wt_typ == J3D_ATK_IRR) 
-               atk->Katk = ((double) cio_read(cio, 1 << atk->coeff_typ) / 8192.0);
-       atk->Natk = cio_read(cio, 1);
-       for (i = 0; i < atk->Natk; i++) {
-               if (atk->filt_cat == J3D_ATK_ARB) 
-                       atk->Oatk[i] = cio_read(cio, 1);
-               if (atk->wt_typ == J3D_ATK_REV){
-                       atk->Eatk[i] = cio_read(cio, 1);
-                       atk->Batk[i] = cio_read(cio, 1);
-               }
-               atk->LCatk[i] = cio_read(cio, 1);
-               for (k = 0; k < atk->LCatk[i]; k++)
-                       atk->Aatk[i][k] = ((double) cio_read(cio, 1 << atk->coeff_typ) / 8192.0);
-       }
-}
-static void j3d_write_cbd(opj_j3d_t *j3d){
-}
-static void j3d_read_cbd(opj_j3d_t *j3d){
-}
-static void j3d_write_mct(opj_j3d_t *j3d){
-}
-static void j3d_read_mct(opj_j3d_t *j3d){
-}
-static void j3d_write_mcc(opj_j3d_t *j3d){
-}
-static void j3d_read_mcc(opj_j3d_t *j3d){
-}
-static void j3d_write_mco(opj_j3d_t *j3d){
-}
-static void j3d_read_mco(opj_j3d_t *j3d){
-}
-static void j3d_write_nlt(opj_j3d_t *j3d){
-}
-static void j3d_read_nlt(opj_j3d_t *j3d){
-}
-/* ----------------------------------------------------------------------- 
+    /*Initialization of volume*/
+    cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
+    cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
+    cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
+    cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(
+                                            opj_tcp_t));
+    cp->tileno = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
+    cp->tileno_size = 0;
+
+    for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
+        cp->tcps[i].POC = 0;
+        cp->tcps[i].numpocs = 0;
+        cp->tcps[i].first = 1;
+    }
+
+    /* Initialization for PPM marker (Packets header)*/
+    cp->ppm = 0;
+    cp->ppm_data = NULL;
+    cp->ppm_data_first = NULL;
+    cp->ppm_previous = 0;
+    cp->ppm_store = 0;
+
+    j3d->default_tcp->tccps = (opj_tccp_t *) opj_malloc(sizeof(
+                                  opj_tccp_t) * volume->numcomps);
+    for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
+        cp->tcps[i].tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) *
+                            volume->numcomps);
+    }
+    j3d->tile_data = (unsigned char **) opj_malloc(cp->tw * cp->th * cp->tl *
+                     sizeof(unsigned char *));
+    j3d->tile_len = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
+    j3d->state = J3D_STATE_MH;
+
+}
+static void j3d_write_dco(opj_j3d_t *j3d)
+{
+    int lenp, len, i;
+    int dcotype;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    dcotype = 1; /* Offsets are 16bit signed integers Table A21 15444-2 */
+    cio_write(cio, J3D_MS_DCO, 2);  /* DCO */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, dcotype, 1);
+    if (dcotype == 0) {
+        for (i = 0; i < volume->numcomps; i++) {
+            cio_write(cio, volume->comps[i].dcoffset, 1);    /* SPdco_i */
+        }
+    } else if (dcotype == 1) {
+        for (i = 0; i < volume->numcomps; i++) {
+            cio_write(cio, volume->comps[i].dcoffset, 1);   /* SPdco_i */
+            opj_event_msg(j3d->cinfo, EVT_INFO, "dcotype %d DCO %d \n", dcotype,
+                          volume->comps[i].dcoffset);
+        }
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Ldco */
+    cio_seek(cio, lenp + len);
+
+}
+static void j3d_read_dco(opj_j3d_t *j3d)
+{
+    int len, i;
+    int dcotype;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    len = cio_read(cio, 2);         /* Lsiz */
+    dcotype = cio_read(cio, 1); /*offset 8bit unsigned / 16bit signed integers*/
+    if (dcotype == 0) {
+        for (i = 0; i < volume->numcomps; i++) {
+            volume->comps[i].dcoffset = cio_read(cio, 1);
+            if (volume->comps[i].dcoffset > 128) {
+                volume->comps[i].dcoffset = volume->comps[i].dcoffset - 256;
+            }
+        }
+    } else if (dcotype == 1) {
+        for (i = 0; i < volume->numcomps; i++) {
+            volume->comps[i].dcoffset = cio_read(cio, 1);
+            if (volume->comps[i].dcoffset > 128) {
+                volume->comps[i].dcoffset = volume->comps[i].dcoffset - 256;
+            }
+        }
+    }
+
+}
+static void j3d_write_atk(opj_j3d_t *j3d)
+{
+    int lenp, len, s, k;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_atk_t *atk = j3d->cp->tcps->tccps->atk;
+
+    cio_write(cio, J3D_MS_ATK, 2);  /* ATK */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, atk->index + (atk->coeff_typ << 8) + (atk->filt_cat << 11)
+              + (atk->wt_typ << 12) + (atk->minit << 13) + (atk->exten << 14),
+              2);            /* Satk */
+    if (atk->wt_typ == J3D_ATK_IRR) {
+        cio_write(cio, (unsigned int)(atk->Katk * 8192.0), 1 << atk->coeff_typ);
+    }
+    cio_write(cio, atk->Natk, 1);
+    for (s = 0; s < atk->Natk; s++) {
+        if (atk->filt_cat == J3D_ATK_ARB) {
+            cio_write(cio, atk->Oatk[s], 1);
+        }
+        if (atk->wt_typ == J3D_ATK_REV) {
+            cio_write(cio, atk->Eatk[s], 1);
+            cio_write(cio, atk->Batk[s], 1);
+        }
+        cio_write(cio, atk->LCatk[s], 1);
+        for (k = 0; k < atk->LCatk[s]; k++) {
+            cio_write(cio, (unsigned int)(atk->Aatk[s][k] * 8192.0), 1 << atk->coeff_typ);
+        }
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Latk */
+    cio_seek(cio, lenp + len);
+}
+static void j3d_read_atk(opj_j3d_t *j3d)
+{
+    int len, i, Satk, k;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+    opj_atk_t *atk = cp->tcps->tccps->atk;
+
+    len = cio_read(cio, 2);         /* Latk */
+    Satk = cio_read(cio, 2);
+    atk->index = Satk & 0x00ff;
+    atk->coeff_typ = Satk >> 8 & 0x0007;
+    atk->filt_cat = Satk >> 11 & 0x0001;
+    atk->wt_typ = Satk >> 12  & 0x0001;
+    atk->minit = Satk >> 13 & 0x0001;
+    atk->exten = Satk >> 14 & 0x0001;
+    if (atk->wt_typ == J3D_ATK_IRR) {
+        atk->Katk = ((double) cio_read(cio, 1 << atk->coeff_typ) / 8192.0);
+    }
+    atk->Natk = cio_read(cio, 1);
+    for (i = 0; i < atk->Natk; i++) {
+        if (atk->filt_cat == J3D_ATK_ARB) {
+            atk->Oatk[i] = cio_read(cio, 1);
+        }
+        if (atk->wt_typ == J3D_ATK_REV) {
+            atk->Eatk[i] = cio_read(cio, 1);
+            atk->Batk[i] = cio_read(cio, 1);
+        }
+        atk->LCatk[i] = cio_read(cio, 1);
+        for (k = 0; k < atk->LCatk[i]; k++) {
+            atk->Aatk[i][k] = ((double) cio_read(cio, 1 << atk->coeff_typ) / 8192.0);
+        }
+    }
+}
+static void j3d_write_cbd(opj_j3d_t *j3d)
+{
+}
+static void j3d_read_cbd(opj_j3d_t *j3d)
+{
+}
+static void j3d_write_mct(opj_j3d_t *j3d)
+{
+}
+static void j3d_read_mct(opj_j3d_t *j3d)
+{
+}
+static void j3d_write_mcc(opj_j3d_t *j3d)
+{
+}
+static void j3d_read_mcc(opj_j3d_t *j3d)
+{
+}
+static void j3d_write_mco(opj_j3d_t *j3d)
+{
+}
+static void j3d_read_mco(opj_j3d_t *j3d)
+{
+}
+static void j3d_write_nlt(opj_j3d_t *j3d)
+{
+}
+static void j3d_read_nlt(opj_j3d_t *j3d)
+{
+}
+/* -----------------------------------------------------------------------
 15444-1 codestream syntax
 ------------------------------------------------------------------------*/
-static void j3d_write_soc(opj_j3d_t *j3d) {
-       opj_cio_t *cio = j3d->cio;
-       cio_write(cio, J3D_MS_SOC, 2);
-}
-
-static void j3d_read_soc(opj_j3d_t *j3d) {
-       j3d->state = J3D_STATE_MHSIZ;
-}
-
-static void j3d_write_siz(opj_j3d_t *j3d) {
-       int i;
-       int lenp, len;
-       int Rsiz;
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       cio_write(cio, J3D_MS_SIZ, 2);  /* SIZ */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       /*cio_write(cio, 0, 2);*/                       /* Rsiz (capabilities of 15444-1 only) */
-       Rsiz = J3D_RSIZ_DCO | J3D_RSIZ_ATK; /** | J3D_RSIZ_MCT | J3D_RSIZ_NONLT (not implemented yet)*/
-       cio_write(cio, Rsiz, 2); /* capabilities of WDv5.2*/
-       cio_write(cio, volume->x1, 4);  /* Xsiz */
-       cio_write(cio, volume->y1, 4);  /* Ysiz */
-       cio_write(cio, volume->x0, 4);  /* X0siz */
-       cio_write(cio, volume->y0, 4);  /* Y0siz */
-       cio_write(cio, cp->tdx, 4);             /* XTsiz */
-       cio_write(cio, cp->tdy, 4);             /* YTsiz */
-       cio_write(cio, cp->tx0, 4);             /* XT0siz */
-       cio_write(cio, cp->ty0, 4);             /* YT0siz */
-       cio_write(cio, volume->numcomps, 2);    /* Csiz */
-       for (i = 0; i < volume->numcomps; i++) {
-               cio_write(cio, volume->comps[i].prec - 1 + (volume->comps[i].sgnd << 7), 1);    /* Ssiz_i */
-               cio_write(cio, volume->comps[i].dx, 1); /* XRsiz_i */
-               cio_write(cio, volume->comps[i].dy, 1); /* YRsiz_i */
-       }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Lsiz */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_siz(opj_j3d_t *j3d) {
-       int len, i;
-       
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       opj_cp_t *cp = j3d->cp;
-       
-       len = cio_read(cio, 2);                 /* Lsiz */
-       cp->rsiz = cio_read(cio, 2);    /* Rsiz (capabilities) */
-       volume->x1 = cio_read(cio, 4);  /* Xsiz */
-       volume->y1 = cio_read(cio, 4);  /* Ysiz */
-       volume->x0 = cio_read(cio, 4);  /* X0siz */
-       volume->y0 = cio_read(cio, 4);  /* Y0siz */
-       cp->tdx = cio_read(cio, 4);             /* XTsiz */
-       cp->tdy = cio_read(cio, 4);             /* YTsiz */
-       cp->tx0 = cio_read(cio, 4);             /* XT0siz */
-       cp->ty0 = cio_read(cio, 4);             /* YT0siz */
-       
-       volume->numcomps = cio_read(cio, 2);    /* Csiz */
-       volume->comps = (opj_volume_comp_t *) opj_malloc(volume->numcomps * sizeof(opj_volume_comp_t));
-       for (i = 0; i < volume->numcomps; i++) {
-               int tmp, j;
-               tmp = cio_read(cio, 1);         /* Ssiz_i */
-               volume->comps[i].prec = (tmp & 0x7f) + 1;
-               volume->comps[i].sgnd = tmp >> 7;
-               volume->comps[i].dx = cio_read(cio, 1); /* XRsiz_i */
-               volume->comps[i].dy = cio_read(cio, 1); /* YRsiz_i */
-               for (j = 0; j < 3; j++) {
-                       volume->comps[i].resno_decoded[j] = 0;          /* number of resolution decoded */
-                       volume->comps[i].factor[j] = 0;         /* reducing factor per component */
-               }
-       }
-
-       if (j3d->cinfo->codec_format == CODEC_J2K){
-               volume->z1 = 1;
-               volume->z0 = 0;
-               volume->numslices = 1;
-               cp->tdz = 1;
-               cp->tz0 = 0;
-               for (i = 0; i < volume->numcomps; i++) 
-                       volume->comps[i].dz = 1;
-
-               /*Initialization of volume*/
-               cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
-               cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
-               cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
-               cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(opj_tcp_t));
-               cp->tileno = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
-               cp->tileno_size = 0;
-               
-               for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
-                       cp->tcps[i].POC = 0;
-                       cp->tcps[i].numpocs = 0;
-                       cp->tcps[i].first = 1;
-               }
-               
-               /* Initialization for PPM marker (Packets header)*/
-               cp->ppm = 0;
-               cp->ppm_data = NULL;
-               cp->ppm_data_first = NULL;
-               cp->ppm_previous = 0;
-               cp->ppm_store = 0;
-               
-               j3d->default_tcp->tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) * volume->numcomps);
-               for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
-                       cp->tcps[i].tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) * volume->numcomps);
-               }
-               j3d->tile_data = (unsigned char **) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(unsigned char *));
-               j3d->tile_len = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
-               j3d->state = J3D_STATE_MH;
-       }
-}
-
-
-
-static void j3d_write_com(opj_j3d_t *j3d) {
-       unsigned int i;
-       int lenp, len;
-
-       opj_cio_t *cio = j3d->cio;
-
-       cio_write(cio, J3D_MS_COM, 2);
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio, 1, 2);
-       /*opj_event_msg(j3d->cinfo, EVT_INFO, "TRF %D ENCOD %d\n",j3d->cp->transform_format,j3d->cp->encoding_format);*/
-       if (j3d->cp->comment != NULL) {
-               char *comment = j3d->cp->comment;
-               for (i = 0; i < strlen(comment); i++) {
+static void j3d_write_soc(opj_j3d_t *j3d)
+{
+    opj_cio_t *cio = j3d->cio;
+    cio_write(cio, J3D_MS_SOC, 2);
+}
+
+static void j3d_read_soc(opj_j3d_t *j3d)
+{
+    j3d->state = J3D_STATE_MHSIZ;
+}
+
+static void j3d_write_siz(opj_j3d_t *j3d)
+{
+    int i;
+    int lenp, len;
+    int Rsiz;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    cio_write(cio, J3D_MS_SIZ, 2);  /* SIZ */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    /*cio_write(cio, 0, 2);*/           /* Rsiz (capabilities of 15444-1 only) */
+    Rsiz = J3D_RSIZ_DCO |
+           J3D_RSIZ_ATK; /** | J3D_RSIZ_MCT | J3D_RSIZ_NONLT (not implemented yet)*/
+    cio_write(cio, Rsiz, 2); /* capabilities of WDv5.2*/
+    cio_write(cio, volume->x1, 4);  /* Xsiz */
+    cio_write(cio, volume->y1, 4);  /* Ysiz */
+    cio_write(cio, volume->x0, 4);  /* X0siz */
+    cio_write(cio, volume->y0, 4);  /* Y0siz */
+    cio_write(cio, cp->tdx, 4);     /* XTsiz */
+    cio_write(cio, cp->tdy, 4);     /* YTsiz */
+    cio_write(cio, cp->tx0, 4);     /* XT0siz */
+    cio_write(cio, cp->ty0, 4);     /* YT0siz */
+    cio_write(cio, volume->numcomps, 2);    /* Csiz */
+    for (i = 0; i < volume->numcomps; i++) {
+        cio_write(cio, volume->comps[i].prec - 1 + (volume->comps[i].sgnd << 7),
+                  1);    /* Ssiz_i */
+        cio_write(cio, volume->comps[i].dx, 1); /* XRsiz_i */
+        cio_write(cio, volume->comps[i].dy, 1); /* YRsiz_i */
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Lsiz */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_siz(opj_j3d_t *j3d)
+{
+    int len, i;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+    opj_cp_t *cp = j3d->cp;
+
+    len = cio_read(cio, 2);         /* Lsiz */
+    cp->rsiz = cio_read(cio, 2);    /* Rsiz (capabilities) */
+    volume->x1 = cio_read(cio, 4);  /* Xsiz */
+    volume->y1 = cio_read(cio, 4);  /* Ysiz */
+    volume->x0 = cio_read(cio, 4);  /* X0siz */
+    volume->y0 = cio_read(cio, 4);  /* Y0siz */
+    cp->tdx = cio_read(cio, 4);     /* XTsiz */
+    cp->tdy = cio_read(cio, 4);     /* YTsiz */
+    cp->tx0 = cio_read(cio, 4);     /* XT0siz */
+    cp->ty0 = cio_read(cio, 4);     /* YT0siz */
+
+    volume->numcomps = cio_read(cio, 2);    /* Csiz */
+    volume->comps = (opj_volume_comp_t *) opj_malloc(volume->numcomps * sizeof(
+                        opj_volume_comp_t));
+    for (i = 0; i < volume->numcomps; i++) {
+        int tmp, j;
+        tmp = cio_read(cio, 1);     /* Ssiz_i */
+        volume->comps[i].prec = (tmp & 0x7f) + 1;
+        volume->comps[i].sgnd = tmp >> 7;
+        volume->comps[i].dx = cio_read(cio, 1); /* XRsiz_i */
+        volume->comps[i].dy = cio_read(cio, 1); /* YRsiz_i */
+        for (j = 0; j < 3; j++) {
+            volume->comps[i].resno_decoded[j] = 0;      /* number of resolution decoded */
+            volume->comps[i].factor[j] = 0;     /* reducing factor per component */
+        }
+    }
+
+    if (j3d->cinfo->codec_format == CODEC_J2K) {
+        volume->z1 = 1;
+        volume->z0 = 0;
+        volume->numslices = 1;
+        cp->tdz = 1;
+        cp->tz0 = 0;
+        for (i = 0; i < volume->numcomps; i++) {
+            volume->comps[i].dz = 1;
+        }
+
+        /*Initialization of volume*/
+        cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
+        cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
+        cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
+        cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(
+                                                opj_tcp_t));
+        cp->tileno = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
+        cp->tileno_size = 0;
+
+        for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
+            cp->tcps[i].POC = 0;
+            cp->tcps[i].numpocs = 0;
+            cp->tcps[i].first = 1;
+        }
+
+        /* Initialization for PPM marker (Packets header)*/
+        cp->ppm = 0;
+        cp->ppm_data = NULL;
+        cp->ppm_data_first = NULL;
+        cp->ppm_previous = 0;
+        cp->ppm_store = 0;
+
+        j3d->default_tcp->tccps = (opj_tccp_t *) opj_malloc(sizeof(
+                                      opj_tccp_t) * volume->numcomps);
+        for (i = 0; i < cp->tw * cp->th * cp->tl ; i++) {
+            cp->tcps[i].tccps = (opj_tccp_t *) opj_malloc(sizeof(opj_tccp_t) *
+                                volume->numcomps);
+        }
+        j3d->tile_data = (unsigned char **) opj_malloc(cp->tw * cp->th * cp->tl *
+                         sizeof(unsigned char *));
+        j3d->tile_len = (int *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(int));
+        j3d->state = J3D_STATE_MH;
+    }
+}
+
+
+
+static void j3d_write_com(opj_j3d_t *j3d)
+{
+    unsigned int i;
+    int lenp, len;
+
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_COM, 2);
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, 1, 2);
+    /*opj_event_msg(j3d->cinfo, EVT_INFO, "TRF %D ENCOD %d\n",j3d->cp->transform_format,j3d->cp->encoding_format);*/
+    if (j3d->cp->comment != NULL) {
+        char *comment = j3d->cp->comment;
+        for (i = 0; i < strlen(comment); i++) {
             cio_write(cio, comment[i], 1);
-               }
-       }
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_com(opj_j3d_t *j3d) {
-       int len;
-       opj_cio_t *cio = j3d->cio;
-
-       len = cio_read(cio, 2);
-       cio_read(cio, 2); // read registration
-       
-       /*opj_event_msg(j3d->cinfo, EVT_INFO, "TRF %D ENCOD %d\n",j3d->cp->transform_format,j3d->cp->encoding_format);*/
-
-       cio_skip(cio, len - 4);  /*posible comments*/
-}
-
-static void j3d_write_cox(opj_j3d_t *j3d, int compno) {
-       int i;
-  int shift = 2;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
-       opj_tccp_t *tccp = &tcp->tccps[compno];
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, tccp->numresolution[0] - 1, 1);  /* SPcox (D) No of decomposition levels in x-axis*/
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               cio_write(cio, tccp->numresolution[1] - 1, 1);  /* SPcox (E) No of decomposition levels in y-axis*/
-               cio_write(cio, tccp->numresolution[2] - 1, 1);  /* SPcox (F) No of decomposition levels in z-axis*/
-       }
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-    /* Table A.7 */
-    shift = 0;
-  }
-       /* (cblkw - 2) + (cblkh - 2) + (cblkl - 2) <= 18*/
-       cio_write(cio, tccp->cblk[0] - shift, 1);                               /* SPcox (G) Cblk width entre 10 y 2 (8 y 0)*/
-       cio_write(cio, tccp->cblk[1] - shift, 1);                               /* SPcox (H) Cblk height*/
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               cio_write(cio, tccp->cblk[2] - shift, 1);                       /* SPcox (I) Cblk depth*/
-       }
-       cio_write(cio, tccp->cblksty, 1);                               /* SPcox (J) Cblk style*/
-       cio_write(cio, tccp->dwtid[0], 1);                              /* SPcox (K) WT in x-axis 15444-2 Table A10*/
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               cio_write(cio, tccp->dwtid[1], 1);                              /* SPcox (L) WT in y-axis 15444-2 Table A10*/
-               cio_write(cio, tccp->dwtid[2], 1);                              /* SPcox (M) WT in z-axis 15444-2 Table A10*/
-       }
-       
-       if (tccp->csty & J3D_CCP_CSTY_PRT) {
-               for (i = 0; i < tccp->numresolution[0]; i++) {
-                       if (i < tccp->numresolution[2])
-                cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4) + (tccp->prctsiz[2][i] << 8), 2);      /* SPcox (N_i) Table A9*/
-                       else
-                               if (j3d->cinfo->codec_format == CODEC_J3D) 
-                    cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4), 2);       /* SPcox (N_i) Table A9*/
-                               else
-                    cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4), 1);       /* SPcox (N_i) Table A9*/               }
-       }
-}
-
-static void j3d_read_cox(opj_j3d_t *j3d, int compno) {
-       int i;
-  int shift = 2;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_tccp_t *tccp = &tcp->tccps[compno];
-       opj_cio_t *cio = j3d->cio;
-
-       tccp->numresolution[0] = cio_read(cio, 1) + 1;  /* SPcox (D) No of decomposition levels in x-axis*/
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               tccp->numresolution[1] = cio_read(cio, 1) + 1;  /* SPcox (E) No of decomposition levels in y-axis*/
-               tccp->numresolution[2] = cio_read(cio, 1) + 1;  /* SPcox (F) No of decomposition levels in z-axis*/
-       }else if (j3d->cinfo->codec_format == CODEC_J2K) {
-               tccp->numresolution[1] = tccp->numresolution[0];        
-               tccp->numresolution[2] = 1;                                                     
-       }
-       /* check the reduce value */
-       cp->reduce[0] = int_min((tccp->numresolution[0])-1, cp->reduce[0]);
-       cp->reduce[1] = int_min((tccp->numresolution[1])-1, cp->reduce[1]);
-       cp->reduce[2] = int_min((tccp->numresolution[2])-1, cp->reduce[2]);
-       
-  if (j3d->cinfo->codec_format == CODEC_J3D) {
-    /* Table A.7 */
-    shift = 0;
-  }
-       tccp->cblk[0] = cio_read(cio, 1) + shift;       /* SPcox (G) */
-       tccp->cblk[1] = cio_read(cio, 1) + shift;       /* SPcox (H) */
-       if (j3d->cinfo->codec_format == CODEC_J3D)
-               tccp->cblk[2] = cio_read(cio, 1) + shift;       /* SPcox (I) */
-       else
-               tccp->cblk[2] = tccp->cblk[0];
-
-       tccp->cblksty = cio_read(cio, 1);       /* SPcox (J) */
-       tccp->dwtid[0] = cio_read(cio, 1);      /* SPcox (K) */
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               tccp->dwtid[1] = cio_read(cio, 1);      /* SPcox (L) */
-               tccp->dwtid[2] = cio_read(cio, 1);      /* SPcox (M) */
-       }else{
-               tccp->dwtid[1] = tccp->dwtid[0];        /* SPcox (L) */
-               tccp->dwtid[2] = tccp->dwtid[0];        /* SPcox (M) */
-       }
-       tccp->reversible = (tccp->dwtid[0]>=1 && tccp->dwtid[1]>=1 && tccp->dwtid[2]>=1); /*TODO: only valid for irreversible 9x7 WTs*/
-       if (tccp->csty & J3D_CP_CSTY_PRT) {
-               for (i = 0; i < tccp->numresolution[0]; i++) {
-                       int tmp = cio_read(cio, 2);     /* SPcox (N_i) */
-                       tccp->prctsiz[0][i] = tmp & 0xf;
-                       tccp->prctsiz[1][i] = tmp >> 4;
-                       tccp->prctsiz[2][i] = tmp >> 8;
-               }
-       }
-}
-
-static void j3d_write_cod(opj_j3d_t *j3d) {
-       opj_cp_t *cp = NULL;
-       opj_tcp_t *tcp = NULL;
-       int lenp, len;
-
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, J3D_MS_COD, 2);  /* COD */
-       
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       
-       cp = j3d->cp;
-       tcp = &cp->tcps[j3d->curtileno];
-
-       /* Scod : Table A-4*/
-       cio_write(cio, tcp->csty, 1);           /* Scod : Coding style parameters */
-       /* SGcod : Table A-5*/
-       cio_write(cio, tcp->prg, 1);            /* SGcod (A) : Progression order */
-       cio_write(cio, tcp->numlayers, 2);      /* SGcod (B) : No of layers */
-       cio_write(cio, tcp->mct, 1);            /* SGcod (C) : Multiple component transformation usage */
-       /* SPcod : Table A-6*/
-       j3d_write_cox(j3d, 0);                          
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);         /* Lcod */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_cod(opj_j3d_t *j3d) {
-       int len, i, pos;
-       
-       opj_cio_t *cio = j3d->cio;
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_volume_t *volume = j3d->volume;
-
-       /* Lcod */
-       len = cio_read(cio, 2);                         
-       /* Scod : Table A-4*/
-       tcp->csty = cio_read(cio, 1);           
-       /* SGcod : Table A-5*/
-       tcp->prg = (OPJ_PROG_ORDER)cio_read(cio, 1);
-       tcp->numlayers = cio_read(cio, 2);      
-       tcp->mct = cio_read(cio, 1);            
-       
-       pos = cio_tell(cio);
-       for (i = 0; i < volume->numcomps; i++) {
-               tcp->tccps[i].csty = tcp->csty & J3D_CP_CSTY_PRT;
-               cio_seek(cio, pos);
-               j3d_read_cox(j3d, i);
-       }
-}
-
-static void j3d_write_coc(opj_j3d_t *j3d, int compno) {
-       int lenp, len;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
-       opj_volume_t *volume = j3d->volume;
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, J3D_MS_COC, 2);  /* COC */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio, compno, volume->numcomps <= 256 ? 1 : 2);        /* Ccoc */
-       cio_write(cio, tcp->tccps[compno].csty, 1);                                     /* Scoc */
-       
-       j3d_write_cox(j3d, compno);
-       
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);                 /* Lcoc */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_coc(opj_j3d_t *j3d) {
-       int len, compno;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_volume_t *volume = j3d->volume;
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2);         /* Lcoc */
-       compno = cio_read(cio, volume->numcomps <= 256 ? 1 : 2);        /* Ccoc */
-       tcp->tccps[compno].csty = cio_read(cio, 1);     /* Scoc */
-       j3d_read_cox(j3d, compno);
-}
-
-static void j3d_write_qcx(opj_j3d_t *j3d, int compno) {
-       int bandno, numbands;
-       int expn, mant;
-       
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
-       opj_tccp_t *tccp = &tcp->tccps[compno];
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, tccp->qntsty + (tccp->numgbits << 5), 1);        /* Sqcx : Table A28 de 15444-1*/
-       
-       if (j3d->cinfo->codec_format == CODEC_J2K)
-        numbands = tccp->qntsty == J3D_CCP_QNTSTY_SIQNT ? 1 : tccp->numresolution[0] * 3 - 2; 
-       else if (j3d->cinfo->codec_format == CODEC_J3D) {
-               int diff = tccp->numresolution[0] - tccp->numresolution[2];
-        numbands = (tccp->qntsty == J3D_CCP_QNTSTY_SIQNT) ? 1 : (tccp->numresolution[0] * 7 - 6) - 4 *diff; /* SIQNT vs. SEQNT */
-       }
-       
-       for (bandno = 0; bandno < numbands; bandno++) {
-               expn = tccp->stepsizes[bandno].expn;
-               mant = tccp->stepsizes[bandno].mant;
-               
-               if (tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) {
-                       cio_write(cio, expn << 3, 1);   /* SPqcx_i */
-               } else {
-                       cio_write(cio, (expn << 11) + mant, 2); /* SPqcx_i */
-               }
-       }
-}
-
-static void j3d_read_qcx(opj_j3d_t *j3d, int compno, int len) {
-       int tmp;
-       int bandno, numbands;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_tccp_t *tccp = &tcp->tccps[compno];
-       opj_cio_t *cio = j3d->cio;
-
-       tmp = cio_read(cio, 1);         /* Sqcx */
-       tccp->qntsty = tmp & 0x1f;
-       tccp->numgbits = tmp >> 5;
-
-       /*Numbands = 1                          si SIQNT
-                            len - 1            si NOQNT
-                                (len - 1) / 2  si SEQNT */
-       numbands = tccp->qntsty == J3D_CCP_QNTSTY_SIQNT ? 1 : ((tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) ? len - 1 : (len - 1) / 2);
-
-       for (bandno = 0; bandno < numbands; bandno++) {
-               int expn, mant;
-               if (tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) {
-                       expn = cio_read(cio, 1) >> 3;   /* SPqcx_i */
-                       mant = 0;
-               } else {
-                       tmp = cio_read(cio, 2);                 /* SPqcx_i */
-                       expn = tmp >> 11;
-                       mant = tmp & 0x7ff;
-               }
-               tccp->stepsizes[bandno].expn = expn;
-               tccp->stepsizes[bandno].mant = mant;
-       }
-       
-       /* Add Antonin : if scalar_derived -> compute other stepsizes */
-       if (tccp->qntsty == J3D_CCP_QNTSTY_SIQNT) {
-               for (bandno = 1; bandno < J3D_MAXBANDS; bandno++) {
-                       int numbands = (cp->transform_format==TRF_2D_DWT) ? 3 : 7;
-                       tccp->stepsizes[bandno].expn = tccp->stepsizes[0].expn - ((bandno - 1) / numbands);
-                       tccp->stepsizes[bandno].mant = tccp->stepsizes[0].mant;
-               }
-       }
-       /* ddA */
-}
-
-static void j3d_write_qcd(opj_j3d_t *j3d) {
-       int lenp, len;
-
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, J3D_MS_QCD, 2);  /* QCD */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       j3d_write_qcx(j3d, 0);                  /* Sqcd*/
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);                 /* Lqcd */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_qcd(opj_j3d_t *j3d) {
-       int len, i, pos;
-
-       opj_cio_t *cio = j3d->cio;
-       opj_volume_t *volume = j3d->volume;
-       
-       len = cio_read(cio, 2);         /* Lqcd */
-       pos = cio_tell(cio);
-       for (i = 0; i < volume->numcomps; i++) {
-               cio_seek(cio, pos);
-               j3d_read_qcx(j3d, i, len - 2);
-       }
-}
-
-static void j3d_write_qcc(opj_j3d_t *j3d, int compno) {
-       int lenp, len;
-
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, J3D_MS_QCC, 2);  /* QCC */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);
-       cio_write(cio, compno, j3d->volume->numcomps <= 256 ? 1 : 2);   /* Cqcc */
-       j3d_write_qcx(j3d, compno);
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);                 /* Lqcc */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_qcc(opj_j3d_t *j3d) {
-       int len, compno;
-       int numcomp = j3d->volume->numcomps;
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2); /* Lqcc */
-       compno = cio_read(cio, numcomp <= 256 ? 1 : 2); /* Cqcc */
-       j3d_read_qcx(j3d, compno, len - 2 - (numcomp <= 256 ? 1 : 2));
-}
-
-static void j3d_write_poc(opj_j3d_t *j3d) {
-       int len, numpchgs, i;
-
-       int numcomps = j3d->volume->numcomps;
-       
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
-       opj_tccp_t *tccp = &tcp->tccps[0];
-       opj_cio_t *cio = j3d->cio;
-
-       numpchgs = tcp->numpocs;
-       cio_write(cio, J3D_MS_POC, 2);  /* POC  */
-       len = 2 + (5 + 2 * (numcomps <= 256 ? 1 : 2)) * numpchgs;
-       cio_write(cio, len, 2);         /* Lpoc */
-       for (i = 0; i < numpchgs; i++) {
-               opj_poc_t *poc = &tcp->pocs[i];
-               cio_write(cio, poc->resno0, 1); /* RSpoc_i */
-               cio_write(cio, poc->compno0, (numcomps <= 256 ? 1 : 2));        /* CSpoc_i */
-               cio_write(cio, poc->layno1, 2); /* LYEpoc_i */
-               poc->layno1 = int_min(poc->layno1, tcp->numlayers);
-               cio_write(cio, poc->resno1, 1); /* REpoc_i */
-               poc->resno1 = int_min(poc->resno1, tccp->numresolution[0]);
-               cio_write(cio, poc->compno1, (numcomps <= 256 ? 1 : 2));        /* CEpoc_i */
-               poc->compno1 = int_min(poc->compno1, numcomps);
-               cio_write(cio, poc->prg, 1);    /* Ppoc_i */
-       }
-}
-
-static void j3d_read_poc(opj_j3d_t *j3d) {
-       int len, numpchgs, i, old_poc;
-
-       int numcomps = j3d->volume->numcomps;
-       
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_tccp_t *tccp = &tcp->tccps[0];
-       opj_cio_t *cio = j3d->cio;
-       
-       old_poc = tcp->POC ? tcp->numpocs + 1 : 0;
-       tcp->POC = 1;
-       len = cio_read(cio, 2);         /* Lpoc */
-       numpchgs = (len - 2) / (5 + 2 * (numcomps <= 256 ? 1 : 2));
-       
-       for (i = old_poc; i < numpchgs + old_poc; i++) {
-               opj_poc_t *poc;
-               poc = &tcp->pocs[i];
-               poc->resno0 = cio_read(cio, 1); /* RSpoc_i */
-               poc->compno0 = cio_read(cio, numcomps <= 256 ? 1 : 2);  /* CSpoc_i */
-               poc->layno1 = int_min(cio_read(cio, 2), (unsigned int) tcp->numlayers); /* LYEpoc_i */
-               poc->resno1 = int_min(cio_read(cio, 1), (unsigned int) tccp->numresolution[0]); /* REpoc_i */
-               poc->compno1 = int_min(
-                       cio_read(cio, numcomps <= 256 ? 1 : 2), (unsigned int) numcomps);       /* CEpoc_i */
-               poc->prg = (OPJ_PROG_ORDER)cio_read(cio, 1);    /* Ppoc_i */
-       }
-       
-       tcp->numpocs = numpchgs + old_poc - 1;
-}
-
-static void j3d_read_crg(opj_j3d_t *j3d) {
-       int len, i, Xcrg_i, Ycrg_i, Zcrg_i;
-       
-       opj_cio_t *cio = j3d->cio;
-       int numcomps = j3d->volume->numcomps;
-       
-       len = cio_read(cio, 2);                 /* Lcrg */
-       for (i = 0; i < numcomps; i++) {
-               Xcrg_i = cio_read(cio, 2);      /* Xcrg_i */
-               Ycrg_i = cio_read(cio, 2);      /* Ycrg_i */
-               Zcrg_i = cio_read(cio, 2);      /* Zcrg_i */
-       }
-}
-
-static void j3d_read_tlm(opj_j3d_t *j3d) {
-       int len, Ztlm, Stlm, ST, SP, tile_tlm, i;
-       long int Ttlm_i, Ptlm_i;
-
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2);         /* Ltlm */
-       Ztlm = cio_read(cio, 1);        /* Ztlm */
-       Stlm = cio_read(cio, 1);        /* Stlm */
-       ST = ((Stlm >> 4) & 0x01) + ((Stlm >> 4) & 0x02);
-       SP = (Stlm >> 6) & 0x01;
-       tile_tlm = (len - 4) / ((SP + 1) * 2 + ST);
-       for (i = 0; i < tile_tlm; i++) {
-               Ttlm_i = cio_read(cio, ST);     /* Ttlm_i */
-               Ptlm_i = cio_read(cio, SP ? 4 : 2);     /* Ptlm_i */
-       }
-}
-
-static void j3d_read_plm(opj_j3d_t *j3d) {
-       int len, i, Zplm, Nplm, add, packet_len = 0;
-       
-       opj_cio_t *cio = j3d->cio;
-
-       len = cio_read(cio, 2);         /* Lplm */
-       Zplm = cio_read(cio, 1);        /* Zplm */
-       len -= 3;
-       while (len > 0) {
-               Nplm = cio_read(cio, 4);                /* Nplm */
-               len -= 4;
-               for (i = Nplm; i > 0; i--) {
-                       add = cio_read(cio, 1);
-                       len--;
-                       packet_len = (packet_len << 7) + add;   /* Iplm_ij */
-                       if ((add & 0x80) == 0) {
-                               /* New packet */
-                               packet_len = 0;
-                       }
-                       if (len <= 0)
-                               break;
-               }
-       }
-}
-
-static void j3d_read_plt(opj_j3d_t *j3d) {
-       int len, i, Zplt, packet_len = 0, add;
-       
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2);         /* Lplt */
-       Zplt = cio_read(cio, 1);        /* Zplt */
-       for (i = len - 3; i > 0; i--) {
-               add = cio_read(cio, 1);
-               packet_len = (packet_len << 7) + add;   /* Iplt_i */
-               if ((add & 0x80) == 0) {
-                       /* New packet */
-                       packet_len = 0;
-               }
-       }
-}
-
-static void j3d_read_ppm(opj_j3d_t *j3d) {
-       int len, Z_ppm, i, j;
-       int N_ppm;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2);
-       cp->ppm = 1;
-       
-       Z_ppm = cio_read(cio, 1);       /* Z_ppm */
-       len -= 3;
-       while (len > 0) {
-               if (cp->ppm_previous == 0) {
-                       N_ppm = cio_read(cio, 4);       /* N_ppm */
-                       len -= 4;
-               } else {
-                       N_ppm = cp->ppm_previous;
-               }
-               j = cp->ppm_store;
-               if (Z_ppm == 0) {       /* First PPM marker */
-                       cp->ppm_data = (unsigned char *) opj_malloc(N_ppm * sizeof(unsigned char));
-                       cp->ppm_data_first = cp->ppm_data;
-                       cp->ppm_len = N_ppm;
-               } else {                        /* NON-first PPM marker */
-                       cp->ppm_data = (unsigned char *) opj_realloc(cp->ppm_data, (N_ppm +     cp->ppm_store) * sizeof(unsigned char));
-                       cp->ppm_data_first = cp->ppm_data;
-                       cp->ppm_len = N_ppm + cp->ppm_store;
-               }
-               for (i = N_ppm; i > 0; i--) {   /* Read packet header */
-                       cp->ppm_data[j] = cio_read(cio, 1);
-                       j++;
-                       len--;
-                       if (len == 0)
-                               break;                  /* Case of non-finished packet header in present marker but finished in next one */
-               }
-               cp->ppm_previous = i - 1;
-               cp->ppm_store = j;
-       }
-}
-
-static void j3d_read_ppt(opj_j3d_t *j3d) {
-       int len, Z_ppt, i, j = 0;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = cp->tcps + j3d->curtileno;
-       opj_cio_t *cio = j3d->cio;
-
-       len = cio_read(cio, 2);
-       Z_ppt = cio_read(cio, 1);
-       tcp->ppt = 1;
-       if (Z_ppt == 0) {               /* First PPT marker */
-               tcp->ppt_data = (unsigned char *) opj_malloc((len - 3) * sizeof(unsigned char));
-               tcp->ppt_data_first = tcp->ppt_data;
-               tcp->ppt_store = 0;
-               tcp->ppt_len = len - 3;
-       } else {                        /* NON-first PPT marker */
-               tcp->ppt_data = (unsigned char *) opj_realloc(tcp->ppt_data, (len - 3 + tcp->ppt_store) * sizeof(unsigned char));
-               tcp->ppt_data_first = tcp->ppt_data;
-               tcp->ppt_len = len - 3 + tcp->ppt_store;
-       }
-       j = tcp->ppt_store;
-       for (i = len - 3; i > 0; i--) {
-               tcp->ppt_data[j] = cio_read(cio, 1);
-               j++;
-       }
-       tcp->ppt_store = j;
-}
-
-static void j3d_write_sot(opj_j3d_t *j3d) {
-       int lenp, len;
-
-       opj_cio_t *cio = j3d->cio;
-
-       j3d->sot_start = cio_tell(cio);
-       cio_write(cio, J3D_MS_SOT, 2);          /* SOT */
-       lenp = cio_tell(cio);
-       cio_skip(cio, 2);                                       /* Lsot (further) */
-       cio_write(cio, j3d->curtileno, 2);      /* Isot */
-       cio_skip(cio, 4);                                       /* Psot (further in j3d_write_sod) */
-       cio_write(cio, 0, 1);                           /* TPsot */
-       cio_write(cio, 1, 1);                           /* TNsot (no of tile-parts of this tile in this codestream)*/
-       len = cio_tell(cio) - lenp;
-       cio_seek(cio, lenp);
-       cio_write(cio, len, 2);                         /* Lsot */
-       cio_seek(cio, lenp + len);
-}
-
-static void j3d_read_sot(opj_j3d_t *j3d) {
-       int len, tileno, totlen, partno, numparts, i;
-       opj_tcp_t *tcp = NULL;
-       char status = 0;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_cio_t *cio = j3d->cio;
-       
-       len = cio_read(cio, 2);
-       tileno = cio_read(cio, 2);
-       
-       if (cp->tileno_size == 0) {
-               cp->tileno[cp->tileno_size] = tileno;
-               cp->tileno_size++;
-       } else {
-               i = 0;
-               while (i < cp->tileno_size && status == 0) {
-                       status = cp->tileno[i] == tileno ? 1 : 0;
-                       i++;
-               }
-               if (status == 0) {
-                       cp->tileno[cp->tileno_size] = tileno;
-                       cp->tileno_size++;
-               }
-       }
-       
-       totlen = cio_read(cio, 4);
-       if (!totlen)
-               totlen = cio_numbytesleft(cio) + 8;
-       
-       partno = cio_read(cio, 1);
-       numparts = cio_read(cio, 1);
-       
-       j3d->curtileno = tileno;
-       j3d->eot = cio_getbp(cio) - 12 + totlen;
-       j3d->state = J3D_STATE_TPH;
-       tcp = &cp->tcps[j3d->curtileno];
-       
-       if (tcp->first == 1) {
-               
-               /* Initialization PPT */
-               opj_tccp_t *tmp = tcp->tccps;
-               memcpy(tcp, j3d->default_tcp, sizeof(opj_tcp_t));
-               tcp->ppt = 0;
-               tcp->ppt_data = NULL;
-               tcp->ppt_data_first = NULL;
-               tcp->tccps = tmp;
-
-               for (i = 0; i < j3d->volume->numcomps; i++) {
-                       tcp->tccps[i] = j3d->default_tcp->tccps[i];
-               }
-               cp->tcps[j3d->curtileno].first = 0;
-       }
-}
-
-static void j3d_write_sod(opj_j3d_t *j3d, void *tile_coder) {
-       int l, layno;
-       int totlen;
-       opj_tcp_t *tcp = NULL;
-       opj_volume_info_t *volume_info = NULL;
-       
-       opj_tcd_t *tcd = (opj_tcd_t*)tile_coder;        /* cast is needed because of conflicts in header inclusions */
-       opj_cp_t *cp = j3d->cp;
-       opj_cio_t *cio = j3d->cio;
-       
-       cio_write(cio, J3D_MS_SOD, 2);
-       if (j3d->curtileno == 0) {
-               j3d->sod_start = cio_tell(cio) + j3d->pos_correction;
-       }
-       
-       /* INDEX >> */
-       volume_info = j3d->volume_info;
-       if (volume_info && volume_info->index_on) {
-               volume_info->tile[j3d->curtileno].end_header = cio_tell(cio) + j3d->pos_correction - 1;
-       }
-       /* << INDEX */
-       
-       tcp = &cp->tcps[j3d->curtileno];
-       for (layno = 0; layno < tcp->numlayers; layno++) {
-               tcp->rates[layno] -= tcp->rates[layno] ? (j3d->sod_start / (cp->th * cp->tw * cp->tl)) : 0;
-       }
-       
-       if(volume_info) {
-               volume_info->num = 0;
-       }
-
-       l = tcd_encode_tile(tcd, j3d->curtileno, cio_getbp(cio), cio_numbytesleft(cio) - 2, volume_info);
-       
-       /* Writing Psot in SOT marker */
-       totlen = cio_tell(cio) + l - j3d->sot_start;
-       cio_seek(cio, j3d->sot_start + 6);
-       cio_write(cio, totlen, 4);
-       cio_seek(cio, j3d->sot_start + totlen);
-}
-
-static void j3d_read_sod(opj_j3d_t *j3d) {
-       int len, truncate = 0, i;
-       unsigned char *data = NULL, *data_ptr = NULL;
-
-       opj_cio_t *cio = j3d->cio;
-       int curtileno = j3d->curtileno;
-       
-       len = int_min(j3d->eot - cio_getbp(cio), cio_numbytesleft(cio) + 1);
-       
-       if (len == cio_numbytesleft(cio) + 1) {
-               truncate = 1;           /* Case of a truncate codestream */
-       }
-       
-       data = (unsigned char *) opj_malloc((j3d->tile_len[curtileno] + len) * sizeof(unsigned char));
-
-       for (i = 0; i < j3d->tile_len[curtileno]; i++) {
-               data[i] = j3d->tile_data[curtileno][i];
-       }
-
-       data_ptr = data + j3d->tile_len[curtileno];
-       for (i = 0; i < len; i++) {
-               data_ptr[i] = cio_read(cio, 1);
-       }
-       
-       j3d->tile_len[curtileno] += len;
-       opj_free(j3d->tile_data[curtileno]);
-       j3d->tile_data[curtileno] = data;
-       
-       if (!truncate) {
-               j3d->state = J3D_STATE_TPHSOT;
-       } else {
-               j3d->state = J3D_STATE_NEOC;    /* RAJOUTE !! */
-       }
-}
-
-static void j3d_write_rgn(opj_j3d_t *j3d, int compno, int tileno) {
-       
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = &cp->tcps[tileno];
-       opj_cio_t *cio = j3d->cio;
-       int numcomps = j3d->volume->numcomps;
-       
-       cio_write(cio, J3D_MS_RGN, 2);                                          /* RGN  */
-       cio_write(cio, numcomps <= 256 ? 5 : 6, 2);                     /* Lrgn */
-       cio_write(cio, compno, numcomps <= 256 ? 1 : 2);        /* Crgn */
-       cio_write(cio, 0, 1);                                                           /* Srgn */
-       cio_write(cio, tcp->tccps[compno].roishift, 1);         /* SPrgn */
-}
-
-static void j3d_read_rgn(opj_j3d_t *j3d) {
-       int len, compno, roisty;
-
-       opj_cp_t *cp = j3d->cp;
-       opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] : j3d->default_tcp;
-       opj_cio_t *cio = j3d->cio;
-       int numcomps = j3d->volume->numcomps;
-
-       len = cio_read(cio, 2);                                                                         /* Lrgn */
-       compno = cio_read(cio, numcomps <= 256 ? 1 : 2);                        /* Crgn */
-       roisty = cio_read(cio, 1);                                                                      /* Srgn */
-       tcp->tccps[compno].roishift = cio_read(cio, 1);                         /* SPrgn */
-}
-
-static void j3d_write_eoc(opj_j3d_t *j3d) {
-       opj_cio_t *cio = j3d->cio;
-       /* opj_event_msg(j3d->cinfo, "%.8x: EOC\n", cio_tell(cio) + j3d->pos_correction); */
-       cio_write(cio, J3D_MS_EOC, 2);
-}
-
-static void j3d_read_eoc(opj_j3d_t *j3d) {
-       int i, tileno;
-
-#ifndef NO_PACKETS_DECODING  
-       opj_tcd_t *tcd = tcd_create(j3d->cinfo);
+        }
+    }
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_com(opj_j3d_t *j3d)
+{
+    int len;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);
+    cio_read(cio, 2); // read registration
+
+    /*opj_event_msg(j3d->cinfo, EVT_INFO, "TRF %D ENCOD %d\n",j3d->cp->transform_format,j3d->cp->encoding_format);*/
+
+    cio_skip(cio, len - 4);  /*posible comments*/
+}
+
+static void j3d_write_cox(opj_j3d_t *j3d, int compno)
+{
+    int i;
+    int shift = 2;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
+    opj_tccp_t *tccp = &tcp->tccps[compno];
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, tccp->numresolution[0] - 1,
+              1);  /* SPcox (D) No of decomposition levels in x-axis*/
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        cio_write(cio, tccp->numresolution[1] - 1,
+                  1);  /* SPcox (E) No of decomposition levels in y-axis*/
+        cio_write(cio, tccp->numresolution[2] - 1,
+                  1);  /* SPcox (F) No of decomposition levels in z-axis*/
+    }
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        /* Table A.7 */
+        shift = 0;
+    }
+    /* (cblkw - 2) + (cblkh - 2) + (cblkl - 2) <= 18*/
+    cio_write(cio, tccp->cblk[0] - shift,
+              1);               /* SPcox (G) Cblk width entre 10 y 2 (8 y 0)*/
+    cio_write(cio, tccp->cblk[1] - shift,
+              1);               /* SPcox (H) Cblk height*/
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        cio_write(cio, tccp->cblk[2] - shift, 1);           /* SPcox (I) Cblk depth*/
+    }
+    cio_write(cio, tccp->cblksty, 1);               /* SPcox (J) Cblk style*/
+    cio_write(cio, tccp->dwtid[0],
+              1);              /* SPcox (K) WT in x-axis 15444-2 Table A10*/
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        cio_write(cio, tccp->dwtid[1],
+                  1);              /* SPcox (L) WT in y-axis 15444-2 Table A10*/
+        cio_write(cio, tccp->dwtid[2],
+                  1);              /* SPcox (M) WT in z-axis 15444-2 Table A10*/
+    }
+
+    if (tccp->csty & J3D_CCP_CSTY_PRT) {
+        for (i = 0; i < tccp->numresolution[0]; i++) {
+            if (i < tccp->numresolution[2]) {
+                cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4) +
+                          (tccp->prctsiz[2][i] << 8), 2);    /* SPcox (N_i) Table A9*/
+            } else if (j3d->cinfo->codec_format == CODEC_J3D) {
+                cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4),
+                          2);    /* SPcox (N_i) Table A9*/
+            } else {
+                cio_write(cio, tccp->prctsiz[0][i] + (tccp->prctsiz[1][i] << 4), 1);
+            }    /* SPcox (N_i) Table A9*/
+        }
+    }
+}
+
+static void j3d_read_cox(opj_j3d_t *j3d, int compno)
+{
+    int i;
+    int shift = 2;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_tccp_t *tccp = &tcp->tccps[compno];
+    opj_cio_t *cio = j3d->cio;
+
+    tccp->numresolution[0] = cio_read(cio,
+                                      1) + 1;  /* SPcox (D) No of decomposition levels in x-axis*/
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        tccp->numresolution[1] = cio_read(cio,
+                                          1) + 1;  /* SPcox (E) No of decomposition levels in y-axis*/
+        tccp->numresolution[2] = cio_read(cio,
+                                          1) + 1;  /* SPcox (F) No of decomposition levels in z-axis*/
+    } else if (j3d->cinfo->codec_format == CODEC_J2K) {
+        tccp->numresolution[1] = tccp->numresolution[0];
+        tccp->numresolution[2] = 1;
+    }
+    /* check the reduce value */
+    cp->reduce[0] = int_min((tccp->numresolution[0]) - 1, cp->reduce[0]);
+    cp->reduce[1] = int_min((tccp->numresolution[1]) - 1, cp->reduce[1]);
+    cp->reduce[2] = int_min((tccp->numresolution[2]) - 1, cp->reduce[2]);
+
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        /* Table A.7 */
+        shift = 0;
+    }
+    tccp->cblk[0] = cio_read(cio, 1) + shift;   /* SPcox (G) */
+    tccp->cblk[1] = cio_read(cio, 1) + shift;   /* SPcox (H) */
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        tccp->cblk[2] = cio_read(cio, 1) + shift;    /* SPcox (I) */
+    } else {
+        tccp->cblk[2] = tccp->cblk[0];
+    }
+
+    tccp->cblksty = cio_read(cio, 1);   /* SPcox (J) */
+    tccp->dwtid[0] = cio_read(cio, 1);  /* SPcox (K) */
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        tccp->dwtid[1] = cio_read(cio, 1);  /* SPcox (L) */
+        tccp->dwtid[2] = cio_read(cio, 1);  /* SPcox (M) */
+    } else {
+        tccp->dwtid[1] = tccp->dwtid[0];    /* SPcox (L) */
+        tccp->dwtid[2] = tccp->dwtid[0];    /* SPcox (M) */
+    }
+    tccp->reversible = (tccp->dwtid[0] >= 1 && tccp->dwtid[1] >= 1 &&
+                        tccp->dwtid[2] >= 1); /*TODO: only valid for irreversible 9x7 WTs*/
+    if (tccp->csty & J3D_CP_CSTY_PRT) {
+        for (i = 0; i < tccp->numresolution[0]; i++) {
+            int tmp = cio_read(cio, 2); /* SPcox (N_i) */
+            tccp->prctsiz[0][i] = tmp & 0xf;
+            tccp->prctsiz[1][i] = tmp >> 4;
+            tccp->prctsiz[2][i] = tmp >> 8;
+        }
+    }
+}
+
+static void j3d_write_cod(opj_j3d_t *j3d)
+{
+    opj_cp_t *cp = NULL;
+    opj_tcp_t *tcp = NULL;
+    int lenp, len;
+
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_COD, 2);  /* COD */
+
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+
+    cp = j3d->cp;
+    tcp = &cp->tcps[j3d->curtileno];
+
+    /* Scod : Table A-4*/
+    cio_write(cio, tcp->csty, 1);       /* Scod : Coding style parameters */
+    /* SGcod : Table A-5*/
+    cio_write(cio, tcp->prg, 1);        /* SGcod (A) : Progression order */
+    cio_write(cio, tcp->numlayers, 2);  /* SGcod (B) : No of layers */
+    cio_write(cio, tcp->mct,
+              1);        /* SGcod (C) : Multiple component transformation usage */
+    /* SPcod : Table A-6*/
+    j3d_write_cox(j3d, 0);
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);     /* Lcod */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_cod(opj_j3d_t *j3d)
+{
+    int len, i, pos;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_volume_t *volume = j3d->volume;
+
+    /* Lcod */
+    len = cio_read(cio, 2);
+    /* Scod : Table A-4*/
+    tcp->csty = cio_read(cio, 1);
+    /* SGcod : Table A-5*/
+    tcp->prg = (OPJ_PROG_ORDER)cio_read(cio, 1);
+    tcp->numlayers = cio_read(cio, 2);
+    tcp->mct = cio_read(cio, 1);
+
+    pos = cio_tell(cio);
+    for (i = 0; i < volume->numcomps; i++) {
+        tcp->tccps[i].csty = tcp->csty & J3D_CP_CSTY_PRT;
+        cio_seek(cio, pos);
+        j3d_read_cox(j3d, i);
+    }
+}
+
+static void j3d_write_coc(opj_j3d_t *j3d, int compno)
+{
+    int lenp, len;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
+    opj_volume_t *volume = j3d->volume;
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_COC, 2);  /* COC */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, compno, volume->numcomps <= 256 ? 1 : 2);    /* Ccoc */
+    cio_write(cio, tcp->tccps[compno].csty, 1);                 /* Scoc */
+
+    j3d_write_cox(j3d, compno);
+
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);         /* Lcoc */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_coc(opj_j3d_t *j3d)
+{
+    int len, compno;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_volume_t *volume = j3d->volume;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);     /* Lcoc */
+    compno = cio_read(cio, volume->numcomps <= 256 ? 1 : 2);    /* Ccoc */
+    tcp->tccps[compno].csty = cio_read(cio, 1); /* Scoc */
+    j3d_read_cox(j3d, compno);
+}
+
+static void j3d_write_qcx(opj_j3d_t *j3d, int compno)
+{
+    int bandno, numbands;
+    int expn, mant;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
+    opj_tccp_t *tccp = &tcp->tccps[compno];
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, tccp->qntsty + (tccp->numgbits << 5),
+              1);    /* Sqcx : Table A28 de 15444-1*/
+
+    numbands = 0; // compiler warning
+    if (j3d->cinfo->codec_format == CODEC_J2K) {
+        numbands = tccp->qntsty == J3D_CCP_QNTSTY_SIQNT ? 1 : tccp->numresolution[0] * 3
+                   - 2;
+    } else if (j3d->cinfo->codec_format == CODEC_J3D) {
+        int diff = tccp->numresolution[0] - tccp->numresolution[2];
+        numbands = (tccp->qntsty == J3D_CCP_QNTSTY_SIQNT) ? 1 :
+                   (tccp->numresolution[0] * 7 - 6) - 4 * diff; /* SIQNT vs. SEQNT */
+    }
+
+    for (bandno = 0; bandno < numbands; bandno++) {
+        expn = tccp->stepsizes[bandno].expn;
+        mant = tccp->stepsizes[bandno].mant;
+
+        if (tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) {
+            cio_write(cio, expn << 3, 1);   /* SPqcx_i */
+        } else {
+            cio_write(cio, (expn << 11) + mant, 2); /* SPqcx_i */
+        }
+    }
+}
+
+static void j3d_read_qcx(opj_j3d_t *j3d, int compno, int len)
+{
+    int tmp;
+    int bandno, numbands;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_tccp_t *tccp = &tcp->tccps[compno];
+    opj_cio_t *cio = j3d->cio;
+
+    tmp = cio_read(cio, 1);     /* Sqcx */
+    tccp->qntsty = tmp & 0x1f;
+    tccp->numgbits = tmp >> 5;
+
+    /*Numbands = 1              si SIQNT
+                 len - 1        si NOQNT
+                 (len - 1) / 2  si SEQNT */
+    numbands = tccp->qntsty == J3D_CCP_QNTSTY_SIQNT ? 1 : ((
+                   tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) ? len - 1 : (len - 1) / 2);
+
+    for (bandno = 0; bandno < numbands; bandno++) {
+        int expn, mant;
+        if (tccp->qntsty == J3D_CCP_QNTSTY_NOQNT) {
+            expn = cio_read(cio, 1) >> 3;   /* SPqcx_i */
+            mant = 0;
+        } else {
+            tmp = cio_read(cio, 2);         /* SPqcx_i */
+            expn = tmp >> 11;
+            mant = tmp & 0x7ff;
+        }
+        tccp->stepsizes[bandno].expn = expn;
+        tccp->stepsizes[bandno].mant = mant;
+    }
+
+    /* Add Antonin : if scalar_derived -> compute other stepsizes */
+    if (tccp->qntsty == J3D_CCP_QNTSTY_SIQNT) {
+        for (bandno = 1; bandno < J3D_MAXBANDS; bandno++) {
+            int numbands = (cp->transform_format == TRF_2D_DWT) ? 3 : 7;
+            tccp->stepsizes[bandno].expn = tccp->stepsizes[0].expn - ((
+                                               bandno - 1) / numbands);
+            tccp->stepsizes[bandno].mant = tccp->stepsizes[0].mant;
+        }
+    }
+    /* ddA */
+}
+
+static void j3d_write_qcd(opj_j3d_t *j3d)
+{
+    int lenp, len;
+
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_QCD, 2);  /* QCD */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    j3d_write_qcx(j3d, 0);          /* Sqcd*/
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);         /* Lqcd */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_qcd(opj_j3d_t *j3d)
+{
+    int len, i, pos;
+
+    opj_cio_t *cio = j3d->cio;
+    opj_volume_t *volume = j3d->volume;
+
+    len = cio_read(cio, 2);     /* Lqcd */
+    pos = cio_tell(cio);
+    for (i = 0; i < volume->numcomps; i++) {
+        cio_seek(cio, pos);
+        j3d_read_qcx(j3d, i, len - 2);
+    }
+}
+
+static void j3d_write_qcc(opj_j3d_t *j3d, int compno)
+{
+    int lenp, len;
+
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_QCC, 2);  /* QCC */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);
+    cio_write(cio, compno, j3d->volume->numcomps <= 256 ? 1 : 2);   /* Cqcc */
+    j3d_write_qcx(j3d, compno);
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);         /* Lqcc */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_qcc(opj_j3d_t *j3d)
+{
+    int len, compno;
+    int numcomp = j3d->volume->numcomps;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2); /* Lqcc */
+    compno = cio_read(cio, numcomp <= 256 ? 1 : 2); /* Cqcc */
+    j3d_read_qcx(j3d, compno, len - 2 - (numcomp <= 256 ? 1 : 2));
+}
+
+static void j3d_write_poc(opj_j3d_t *j3d)
+{
+    int len, numpchgs, i;
+
+    int numcomps = j3d->volume->numcomps;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = &cp->tcps[j3d->curtileno];
+    opj_tccp_t *tccp = &tcp->tccps[0];
+    opj_cio_t *cio = j3d->cio;
+
+    numpchgs = tcp->numpocs;
+    cio_write(cio, J3D_MS_POC, 2);  /* POC  */
+    len = 2 + (5 + 2 * (numcomps <= 256 ? 1 : 2)) * numpchgs;
+    cio_write(cio, len, 2);     /* Lpoc */
+    for (i = 0; i < numpchgs; i++) {
+        opj_poc_t *poc = &tcp->pocs[i];
+        cio_write(cio, poc->resno0, 1); /* RSpoc_i */
+        cio_write(cio, poc->compno0, (numcomps <= 256 ? 1 : 2));    /* CSpoc_i */
+        cio_write(cio, poc->layno1, 2); /* LYEpoc_i */
+        poc->layno1 = int_min(poc->layno1, tcp->numlayers);
+        cio_write(cio, poc->resno1, 1); /* REpoc_i */
+        poc->resno1 = int_min(poc->resno1, tccp->numresolution[0]);
+        cio_write(cio, poc->compno1, (numcomps <= 256 ? 1 : 2));    /* CEpoc_i */
+        poc->compno1 = int_min(poc->compno1, numcomps);
+        cio_write(cio, poc->prg, 1);    /* Ppoc_i */
+    }
+}
+
+static void j3d_read_poc(opj_j3d_t *j3d)
+{
+    int len, numpchgs, i, old_poc;
+
+    int numcomps = j3d->volume->numcomps;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_tccp_t *tccp = &tcp->tccps[0];
+    opj_cio_t *cio = j3d->cio;
+
+    old_poc = tcp->POC ? tcp->numpocs + 1 : 0;
+    tcp->POC = 1;
+    len = cio_read(cio, 2);     /* Lpoc */
+    numpchgs = (len - 2) / (5 + 2 * (numcomps <= 256 ? 1 : 2));
+
+    for (i = old_poc; i < numpchgs + old_poc; i++) {
+        opj_poc_t *poc;
+        poc = &tcp->pocs[i];
+        poc->resno0 = cio_read(cio, 1); /* RSpoc_i */
+        poc->compno0 = cio_read(cio, numcomps <= 256 ? 1 : 2);  /* CSpoc_i */
+        poc->layno1 = int_min(cio_read(cio, 2),
+                              (unsigned int) tcp->numlayers); /* LYEpoc_i */
+        poc->resno1 = int_min(cio_read(cio, 1),
+                              (unsigned int) tccp->numresolution[0]); /* REpoc_i */
+        poc->compno1 = int_min(
+                           cio_read(cio, numcomps <= 256 ? 1 : 2),
+                           (unsigned int) numcomps);   /* CEpoc_i */
+        poc->prg = (OPJ_PROG_ORDER)cio_read(cio, 1);    /* Ppoc_i */
+    }
+
+    tcp->numpocs = numpchgs + old_poc - 1;
+}
+
+static void j3d_read_crg(opj_j3d_t *j3d)
+{
+    int len, i, Xcrg_i, Ycrg_i, Zcrg_i;
+
+    opj_cio_t *cio = j3d->cio;
+    int numcomps = j3d->volume->numcomps;
+
+    len = cio_read(cio, 2);         /* Lcrg */
+    for (i = 0; i < numcomps; i++) {
+        Xcrg_i = cio_read(cio, 2);  /* Xcrg_i */
+        Ycrg_i = cio_read(cio, 2);  /* Ycrg_i */
+        Zcrg_i = cio_read(cio, 2);  /* Zcrg_i */
+    }
+}
+
+static void j3d_read_tlm(opj_j3d_t *j3d)
+{
+    int len, Ztlm, Stlm, ST, SP, tile_tlm, i;
+    long int Ttlm_i, Ptlm_i;
+
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);     /* Ltlm */
+    Ztlm = cio_read(cio, 1);    /* Ztlm */
+    Stlm = cio_read(cio, 1);    /* Stlm */
+    ST = ((Stlm >> 4) & 0x01) + ((Stlm >> 4) & 0x02);
+    SP = (Stlm >> 6) & 0x01;
+    tile_tlm = (len - 4) / ((SP + 1) * 2 + ST);
+    for (i = 0; i < tile_tlm; i++) {
+        Ttlm_i = cio_read(cio, ST); /* Ttlm_i */
+        Ptlm_i = cio_read(cio, SP ? 4 : 2); /* Ptlm_i */
+    }
+}
+
+static void j3d_read_plm(opj_j3d_t *j3d)
+{
+    int len, i, Zplm, Nplm, add, packet_len = 0;
+
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);     /* Lplm */
+    Zplm = cio_read(cio, 1);    /* Zplm */
+    len -= 3;
+    while (len > 0) {
+        Nplm = cio_read(cio, 4);        /* Nplm */
+        len -= 4;
+        for (i = Nplm; i > 0; i--) {
+            add = cio_read(cio, 1);
+            len--;
+            packet_len = (packet_len << 7) + add;   /* Iplm_ij */
+            if ((add & 0x80) == 0) {
+                /* New packet */
+                packet_len = 0;
+            }
+            if (len <= 0) {
+                break;
+            }
+        }
+    }
+}
+
+static void j3d_read_plt(opj_j3d_t *j3d)
+{
+    int len, i, Zplt, packet_len = 0, add;
+
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);     /* Lplt */
+    Zplt = cio_read(cio, 1);    /* Zplt */
+    for (i = len - 3; i > 0; i--) {
+        add = cio_read(cio, 1);
+        packet_len = (packet_len << 7) + add;   /* Iplt_i */
+        if ((add & 0x80) == 0) {
+            /* New packet */
+            packet_len = 0;
+        }
+    }
+}
+
+static void j3d_read_ppm(opj_j3d_t *j3d)
+{
+    int len, Z_ppm, i, j;
+    int N_ppm;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);
+    cp->ppm = 1;
+
+    Z_ppm = cio_read(cio, 1);   /* Z_ppm */
+    len -= 3;
+    while (len > 0) {
+        if (cp->ppm_previous == 0) {
+            N_ppm = cio_read(cio, 4);   /* N_ppm */
+            len -= 4;
+        } else {
+            N_ppm = cp->ppm_previous;
+        }
+        j = cp->ppm_store;
+        if (Z_ppm == 0) {   /* First PPM marker */
+            cp->ppm_data = (unsigned char *) opj_malloc(N_ppm * sizeof(unsigned char));
+            cp->ppm_data_first = cp->ppm_data;
+            cp->ppm_len = N_ppm;
+        } else {            /* NON-first PPM marker */
+            cp->ppm_data = (unsigned char *) opj_realloc(cp->ppm_data,
+                           (N_ppm + cp->ppm_store) * sizeof(unsigned char));
+            cp->ppm_data_first = cp->ppm_data;
+            cp->ppm_len = N_ppm + cp->ppm_store;
+        }
+        for (i = N_ppm; i > 0; i--) {   /* Read packet header */
+            cp->ppm_data[j] = cio_read(cio, 1);
+            j++;
+            len--;
+            if (len == 0) {
+                break;    /* Case of non-finished packet header in present marker but finished in next one */
+            }
+        }
+        cp->ppm_previous = i - 1;
+        cp->ppm_store = j;
+    }
+}
+
+static void j3d_read_ppt(opj_j3d_t *j3d)
+{
+    int len, Z_ppt, i, j = 0;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = cp->tcps + j3d->curtileno;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);
+    Z_ppt = cio_read(cio, 1);
+    tcp->ppt = 1;
+    if (Z_ppt == 0) {       /* First PPT marker */
+        tcp->ppt_data = (unsigned char *) opj_malloc((len - 3) * sizeof(unsigned char));
+        tcp->ppt_data_first = tcp->ppt_data;
+        tcp->ppt_store = 0;
+        tcp->ppt_len = len - 3;
+    } else {            /* NON-first PPT marker */
+        tcp->ppt_data = (unsigned char *) opj_realloc(tcp->ppt_data,
+                        (len - 3 + tcp->ppt_store) * sizeof(unsigned char));
+        tcp->ppt_data_first = tcp->ppt_data;
+        tcp->ppt_len = len - 3 + tcp->ppt_store;
+    }
+    j = tcp->ppt_store;
+    for (i = len - 3; i > 0; i--) {
+        tcp->ppt_data[j] = cio_read(cio, 1);
+        j++;
+    }
+    tcp->ppt_store = j;
+}
+
+static void j3d_write_sot(opj_j3d_t *j3d)
+{
+    int lenp, len;
+
+    opj_cio_t *cio = j3d->cio;
+
+    j3d->sot_start = cio_tell(cio);
+    cio_write(cio, J3D_MS_SOT, 2);      /* SOT */
+    lenp = cio_tell(cio);
+    cio_skip(cio, 2);                   /* Lsot (further) */
+    cio_write(cio, j3d->curtileno, 2);  /* Isot */
+    cio_skip(cio, 4);                   /* Psot (further in j3d_write_sod) */
+    cio_write(cio, 0, 1);               /* TPsot */
+    cio_write(cio, 1,
+              1);               /* TNsot (no of tile-parts of this tile in this codestream)*/
+    len = cio_tell(cio) - lenp;
+    cio_seek(cio, lenp);
+    cio_write(cio, len, 2);             /* Lsot */
+    cio_seek(cio, lenp + len);
+}
+
+static void j3d_read_sot(opj_j3d_t *j3d)
+{
+    int len, tileno, totlen, partno, numparts, i;
+    opj_tcp_t *tcp = NULL;
+    char status = 0;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_cio_t *cio = j3d->cio;
+
+    len = cio_read(cio, 2);
+    tileno = cio_read(cio, 2);
+
+    if (cp->tileno_size == 0) {
+        cp->tileno[cp->tileno_size] = tileno;
+        cp->tileno_size++;
+    } else {
+        i = 0;
+        while (i < cp->tileno_size && status == 0) {
+            status = cp->tileno[i] == tileno ? 1 : 0;
+            i++;
+        }
+        if (status == 0) {
+            cp->tileno[cp->tileno_size] = tileno;
+            cp->tileno_size++;
+        }
+    }
+
+    totlen = cio_read(cio, 4);
+    if (!totlen) {
+        totlen = cio_numbytesleft(cio) + 8;
+    }
+
+    partno = cio_read(cio, 1);
+    numparts = cio_read(cio, 1);
+
+    j3d->curtileno = tileno;
+    j3d->eot = cio_getbp(cio) - 12 + totlen;
+    j3d->state = J3D_STATE_TPH;
+    tcp = &cp->tcps[j3d->curtileno];
+
+    if (tcp->first == 1) {
+
+        /* Initialization PPT */
+        opj_tccp_t *tmp = tcp->tccps;
+        memcpy(tcp, j3d->default_tcp, sizeof(opj_tcp_t));
+        tcp->ppt = 0;
+        tcp->ppt_data = NULL;
+        tcp->ppt_data_first = NULL;
+        tcp->tccps = tmp;
+
+        for (i = 0; i < j3d->volume->numcomps; i++) {
+            tcp->tccps[i] = j3d->default_tcp->tccps[i];
+        }
+        cp->tcps[j3d->curtileno].first = 0;
+    }
+}
+
+static void j3d_write_sod(opj_j3d_t *j3d, void *tile_coder)
+{
+    int l, layno;
+    int totlen;
+    opj_tcp_t *tcp = NULL;
+    opj_volume_info_t *volume_info = NULL;
+
+    opj_tcd_t *tcd = (opj_tcd_t*)
+                     tile_coder;    /* cast is needed because of conflicts in header inclusions */
+    opj_cp_t *cp = j3d->cp;
+    opj_cio_t *cio = j3d->cio;
+
+    cio_write(cio, J3D_MS_SOD, 2);
+    if (j3d->curtileno == 0) {
+        j3d->sod_start = cio_tell(cio) + j3d->pos_correction;
+    }
+
+    /* INDEX >> */
+    volume_info = j3d->volume_info;
+    if (volume_info && volume_info->index_on) {
+        volume_info->tile[j3d->curtileno].end_header = cio_tell(
+                    cio) + j3d->pos_correction - 1;
+    }
+    /* << INDEX */
+
+    tcp = &cp->tcps[j3d->curtileno];
+    for (layno = 0; layno < tcp->numlayers; layno++) {
+        tcp->rates[layno] -= tcp->rates[layno] ? (j3d->sod_start /
+                             (cp->th * cp->tw * cp->tl)) : 0;
+    }
+
+    if (volume_info) {
+        volume_info->num = 0;
+    }
+
+    l = tcd_encode_tile(tcd, j3d->curtileno, cio_getbp(cio),
+                        cio_numbytesleft(cio) - 2, volume_info);
+
+    /* Writing Psot in SOT marker */
+    totlen = cio_tell(cio) + l - j3d->sot_start;
+    cio_seek(cio, j3d->sot_start + 6);
+    cio_write(cio, totlen, 4);
+    cio_seek(cio, j3d->sot_start + totlen);
+}
+
+static void j3d_read_sod(opj_j3d_t *j3d)
+{
+    int len, truncate = 0, i;
+    unsigned char *data = NULL, *data_ptr = NULL;
+
+    opj_cio_t *cio = j3d->cio;
+    int curtileno = j3d->curtileno;
+
+    len = int_min(j3d->eot - cio_getbp(cio), cio_numbytesleft(cio) + 1);
+
+    if (len == cio_numbytesleft(cio) + 1) {
+        truncate = 1;       /* Case of a truncate codestream */
+    }
+
+    data = (unsigned char *) opj_malloc((j3d->tile_len[curtileno] + len) * sizeof(
+                                            unsigned char));
+
+    for (i = 0; i < j3d->tile_len[curtileno]; i++) {
+        data[i] = j3d->tile_data[curtileno][i];
+    }
+
+    data_ptr = data + j3d->tile_len[curtileno];
+    for (i = 0; i < len; i++) {
+        data_ptr[i] = cio_read(cio, 1);
+    }
+
+    j3d->tile_len[curtileno] += len;
+    opj_free(j3d->tile_data[curtileno]);
+    j3d->tile_data[curtileno] = data;
+
+    if (!truncate) {
+        j3d->state = J3D_STATE_TPHSOT;
+    } else {
+        j3d->state = J3D_STATE_NEOC;    /* RAJOUTE !! */
+    }
+}
+
+static void j3d_write_rgn(opj_j3d_t *j3d, int compno, int tileno)
+{
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = &cp->tcps[tileno];
+    opj_cio_t *cio = j3d->cio;
+    int numcomps = j3d->volume->numcomps;
+
+    cio_write(cio, J3D_MS_RGN, 2);                      /* RGN  */
+    cio_write(cio, numcomps <= 256 ? 5 : 6, 2);         /* Lrgn */
+    cio_write(cio, compno, numcomps <= 256 ? 1 : 2);    /* Crgn */
+    cio_write(cio, 0, 1);                               /* Srgn */
+    cio_write(cio, tcp->tccps[compno].roishift, 1);     /* SPrgn */
+}
+
+static void j3d_read_rgn(opj_j3d_t *j3d)
+{
+    int len, compno, roisty;
+
+    opj_cp_t *cp = j3d->cp;
+    opj_tcp_t *tcp = j3d->state == J3D_STATE_TPH ? &cp->tcps[j3d->curtileno] :
+                     j3d->default_tcp;
+    opj_cio_t *cio = j3d->cio;
+    int numcomps = j3d->volume->numcomps;
+
+    len = cio_read(cio, 2);                                     /* Lrgn */
+    compno = cio_read(cio, numcomps <= 256 ? 1 : 2);            /* Crgn */
+    roisty = cio_read(cio, 1);                                  /* Srgn */
+    tcp->tccps[compno].roishift = cio_read(cio, 1);             /* SPrgn */
+}
+
+static void j3d_write_eoc(opj_j3d_t *j3d)
+{
+    opj_cio_t *cio = j3d->cio;
+    /* opj_event_msg(j3d->cinfo, "%.8x: EOC\n", cio_tell(cio) + j3d->pos_correction); */
+    cio_write(cio, J3D_MS_EOC, 2);
+}
+
+static void j3d_read_eoc(opj_j3d_t *j3d)
+{
+    int i, tileno;
+
+#ifndef NO_PACKETS_DECODING
+    opj_tcd_t *tcd = tcd_create(j3d->cinfo);
     tcd_malloc_decode(tcd, j3d->volume, j3d->cp);
-       /*j3d_dump_volume(stdout, tcd->volume);
-       j3d_dump_cp(stdout, tcd->volume, tcd->cp);*/
-       for (i = 0; i < j3d->cp->tileno_size; i++) {
-               tileno = j3d->cp->tileno[i];
-               /*opj_event_msg(j3d->cinfo, EVT_INFO, "tcd_decode_tile \n");*/
-               tcd_decode_tile(tcd, j3d->tile_data[tileno], j3d->tile_len[tileno], tileno);
-               opj_free(j3d->tile_data[tileno]);
-               j3d->tile_data[tileno] = NULL;
-       }
-       tcd_free_decode(tcd);
-       tcd_destroy(tcd);
-#else 
-       for (i = 0; i < j3d->cp->tileno_size; i++) {
-               tileno = j3d->cp->tileno[i];
-               opj_free(j3d->tile_data[tileno]);
-               j3d->tile_data[tileno] = NULL;
-       }
+    /*j3d_dump_volume(stdout, tcd->volume);
+    j3d_dump_cp(stdout, tcd->volume, tcd->cp);*/
+    for (i = 0; i < j3d->cp->tileno_size; i++) {
+        tileno = j3d->cp->tileno[i];
+        /*opj_event_msg(j3d->cinfo, EVT_INFO, "tcd_decode_tile \n");*/
+        tcd_decode_tile(tcd, j3d->tile_data[tileno], j3d->tile_len[tileno], tileno);
+        opj_free(j3d->tile_data[tileno]);
+        j3d->tile_data[tileno] = NULL;
+    }
+    tcd_free_decode(tcd);
+    tcd_destroy(tcd);
+#else
+    for (i = 0; i < j3d->cp->tileno_size; i++) {
+        tileno = j3d->cp->tileno[i];
+        opj_free(j3d->tile_data[tileno]);
+        j3d->tile_data[tileno] = NULL;
+    }
 #endif
-       
-       j3d->state = J3D_STATE_MT;
+
+    j3d->state = J3D_STATE_MT;
 }
 
-static void j3d_read_unk(opj_j3d_t *j3d) {
-       opj_event_msg(j3d->cinfo, EVT_WARNING, "Unknown marker\n");
+static void j3d_read_unk(opj_j3d_t *j3d)
+{
+    opj_event_msg(j3d->cinfo, EVT_WARNING, "Unknown marker\n");
 }
 
 static opj_atk_t atk_info_wt[] = {
-       {0, 1, J3D_ATK_WS, J3D_ATK_IRR, 0, J3D_ATK_WS, 1.230174104, 4, {0}, {0}, {0}, {1,1,1,1}, {-1.586134342059924, -0.052980118572961, 0.882911075530934, 0.443506852043971}},/* WT 9-7 IRR*/
-       {1, 0, J3D_ATK_WS, J3D_ATK_REV, 0, J3D_ATK_WS, 0, 2, {0}, {1,2}, {1,2}, {1,1}, {-1.0,1.0}},/* WT 5-3 REV*/
-       {2, 0, J3D_ATK_ARB, J3D_ATK_REV, 0, J3D_ATK_CON, 0, 2, {0,0}, {0,1}, {0,1}, {1,1}, {{-1.0},{1.0}}}, /* WT 2-2 REV*/
-       {3, 0, J3D_ATK_ARB, J3D_ATK_REV, 1, J3D_ATK_CON, 0, 3, {0,0,-1}, {0,1,2}, {0,1,2}, {1,1,3}, {{-1.0},{1.0},{1.0,0.0,-1.0}}}, /* WT 2-6 REV*/
-       {4, 0, J3D_ATK_ARB, J3D_ATK_REV, 1, J3D_ATK_CON, 0, 3, {0,0,-2}, {0,1,6}, {0,1,32}, {1,1,5}, {{-1},{1},{-3.0,22.0,0.0,-22.0,3.0}}}, /* WT 2-10 REV*/
-       {5, 1, J3D_ATK_ARB, J3D_ATK_IRR, 1, J3D_ATK_WS, 1, 7, {0}, {0}, {0}, {1,1,2,1,2,1,3},{{-1},{1.58613434206},{-0.460348209828, 0.460348209828},{0.25},{0.374213867768,-0.374213867768},{-1.33613434206},{0.29306717103,0,-0.29306717103}}}, /* WT 6-10 IRR*/
-       {6, 1, J3D_ATK_ARB, J3D_ATK_IRR, 0, J3D_ATK_WS, 1, 11, {0}, {0}, {0}, {1,1,2,1,2,1,2,1,2,1,5},{{-1},{0,99715069105},{-1.00573127827, 1.00573127827},{-0.27040357631},{2.20509972343, -2.20509972343},{0.08059995736},
-               {-1.62682532350, 1.62682532350},{0.52040357631},{0.60404664250, -0.60404664250},{-0.82775064841},{-0.06615812964, 0.29402137720, 0, -0.29402137720, 0.06615812964}}}, /* WT 10-18 IRR*/
-       {7, 1, J3D_ATK_WS, J3D_ATK_IRR, 0, J3D_ATK_WS, 1, 2, {0}, {0}, {0}, {1,1}, {-0.5, 0.25}},       /* WT 5-3 IRR*/
-       {8, 0, J3D_ATK_WS, J3D_ATK_REV, 0, J3D_ATK_WS, 0, 2, {0}, {4,4}, {8,8}, {2,2}, {{-9,1},{5,-1}}}         /* WT 13-7 REV*/
+    {0, 1, J3D_ATK_WS, J3D_ATK_IRR, 0, J3D_ATK_WS, 1.230174104, 4, {0}, {0}, {0}, {1, 1, 1, 1}, {-1.586134342059924, -0.052980118572961, 0.882911075530934, 0.443506852043971}}, /* WT 9-7 IRR*/
+    {1, 0, J3D_ATK_WS, J3D_ATK_REV, 0, J3D_ATK_WS, 0, 2, {0}, {1, 2}, {1, 2}, {1, 1}, {-1.0, 1.0}}, /* WT 5-3 REV*/
+    {2, 0, J3D_ATK_ARB, J3D_ATK_REV, 0, J3D_ATK_CON, 0, 2, {0, 0}, {0, 1}, {0, 1}, {1, 1}, {{-1.0}, {1.0}}}, /* WT 2-2 REV*/
+    {3, 0, J3D_ATK_ARB, J3D_ATK_REV, 1, J3D_ATK_CON, 0, 3, {0, 0, -1}, {0, 1, 2}, {0, 1, 2}, {1, 1, 3}, {{-1.0}, {1.0}, {1.0, 0.0, -1.0}}}, /* WT 2-6 REV*/
+    {4, 0, J3D_ATK_ARB, J3D_ATK_REV, 1, J3D_ATK_CON, 0, 3, {0, 0, -2}, {0, 1, 6}, {0, 1, 32}, {1, 1, 5}, {{-1}, {1}, {-3.0, 22.0, 0.0, -22.0, 3.0}}}, /* WT 2-10 REV*/
+    {5, 1, J3D_ATK_ARB, J3D_ATK_IRR, 1, J3D_ATK_WS, 1, 7, {0}, {0}, {0}, {1, 1, 2, 1, 2, 1, 3}, {{-1}, {1.58613434206}, {-0.460348209828, 0.460348209828}, {0.25}, {0.374213867768, -0.374213867768}, {-1.33613434206}, {0.29306717103, 0, -0.29306717103}}}, /* WT 6-10 IRR*/
+    {
+        6, 1, J3D_ATK_ARB, J3D_ATK_IRR, 0, J3D_ATK_WS, 1, 11, {0}, {0}, {0}, {1, 1, 2, 1, 2, 1, 2, 1, 2, 1, 5}, {{-1}, {0, 99715069105}, {-1.00573127827, 1.00573127827}, {-0.27040357631}, {2.20509972343, -2.20509972343}, {0.08059995736},
+            {-1.62682532350, 1.62682532350}, {0.52040357631}, {0.60404664250, -0.60404664250}, {-0.82775064841}, {-0.06615812964, 0.29402137720, 0, -0.29402137720, 0.06615812964}
+        }
+    }, /* WT 10-18 IRR*/
+    {7, 1, J3D_ATK_WS, J3D_ATK_IRR, 0, J3D_ATK_WS, 1, 2, {0}, {0}, {0}, {1, 1}, {-0.5, 0.25}},  /* WT 5-3 IRR*/
+    {8, 0, J3D_ATK_WS, J3D_ATK_REV, 0, J3D_ATK_WS, 0, 2, {0}, {4, 4}, {8, 8}, {2, 2}, {{-9, 1}, {5, -1}}} /* WT 13-7 REV*/
 };
 
 typedef struct opj_dec_mstabent {
-       /** marker value */
-       int id;
-       /** value of the state when the marker can appear */
-       int states;
-       /** action linked to the marker */
-       void (*handler) (opj_j3d_t *j3d);
+    /** marker value */
+    int id;
+    /** value of the state when the marker can appear */
+    int states;
+    /** action linked to the marker */
+    void (*handler)(opj_j3d_t *j3d);
 } opj_dec_mstabent_t;
 
 opj_dec_mstabent_t j3d_dec_mstab[] = {
-  {J3D_MS_SOC, J3D_STATE_MHSOC, j3d_read_soc},
-  {J3D_MS_SOT, J3D_STATE_MH | J3D_STATE_TPHSOT, j3d_read_sot},
-  {J3D_MS_SOD, J3D_STATE_TPH, j3d_read_sod},
-  {J3D_MS_EOC, J3D_STATE_TPHSOT, j3d_read_eoc},
-  {J3D_MS_CAP, J3D_STATE_MHSIZ, j3d_read_cap},
-  {J3D_MS_SIZ, J3D_STATE_MHSIZ, j3d_read_siz},
-  {J3D_MS_NSI, J3D_STATE_MHSIZ, j3d_read_nsi},
-  {J3D_MS_COD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_cod},
-  {J3D_MS_COC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_coc},
-  {J3D_MS_RGN, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_rgn},
-  {J3D_MS_QCD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_qcd},
-  {J3D_MS_QCC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_qcc},
-  {J3D_MS_POC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_poc},
-  {J3D_MS_TLM, J3D_STATE_MH, j3d_read_tlm},
-  {J3D_MS_PLM, J3D_STATE_MH, j3d_read_plm},
-  {J3D_MS_PLT, J3D_STATE_TPH, j3d_read_plt},
-  {J3D_MS_PPM, J3D_STATE_MH, j3d_read_ppm},
-  {J3D_MS_PPT, J3D_STATE_TPH, j3d_read_ppt},
-  {J3D_MS_SOP, 0, 0},
-  {J3D_MS_CRG, J3D_STATE_MH, j3d_read_crg},
-  {J3D_MS_COM, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_com},
-  {J3D_MS_DCO, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_dco},
-  {J3D_MS_ATK, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_atk},
-  {0, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_unk}
-  /*, -->must define the j3d_read functions
-  {J3D_MS_CBD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_cbd},
-  {J3D_MS_MCT, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mct},
-  {J3D_MS_MCC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mcc},
-  {J3D_MS_MCO, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mco},
-  {J3D_MS_NLT, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_nlt},
-  {J3D_MS_VMS, J3D_STATE_MH, j3d_read_vms},
-  {J3D_MS_DFS, J3D_STATE_MH, j3d_read_dfs},
-  {J3D_MS_ADS, J3D_STATE_MH, j3d_read_ads},
-  {J3D_MS_QPD, J3D_STATE_MH, j3d_read_qpd},
-  {J3D_MS_QPC, J3D_STATE_TPH, j3d_read_qpc}*/
+    {J3D_MS_SOC, J3D_STATE_MHSOC, j3d_read_soc},
+    {J3D_MS_SOT, J3D_STATE_MH | J3D_STATE_TPHSOT, j3d_read_sot},
+    {J3D_MS_SOD, J3D_STATE_TPH, j3d_read_sod},
+    {J3D_MS_EOC, J3D_STATE_TPHSOT, j3d_read_eoc},
+    {J3D_MS_CAP, J3D_STATE_MHSIZ, j3d_read_cap},
+    {J3D_MS_SIZ, J3D_STATE_MHSIZ, j3d_read_siz},
+    {J3D_MS_NSI, J3D_STATE_MHSIZ, j3d_read_nsi},
+    {J3D_MS_COD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_cod},
+    {J3D_MS_COC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_coc},
+    {J3D_MS_RGN, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_rgn},
+    {J3D_MS_QCD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_qcd},
+    {J3D_MS_QCC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_qcc},
+    {J3D_MS_POC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_poc},
+    {J3D_MS_TLM, J3D_STATE_MH, j3d_read_tlm},
+    {J3D_MS_PLM, J3D_STATE_MH, j3d_read_plm},
+    {J3D_MS_PLT, J3D_STATE_TPH, j3d_read_plt},
+    {J3D_MS_PPM, J3D_STATE_MH, j3d_read_ppm},
+    {J3D_MS_PPT, J3D_STATE_TPH, j3d_read_ppt},
+    {J3D_MS_SOP, 0, 0},
+    {J3D_MS_CRG, J3D_STATE_MH, j3d_read_crg},
+    {J3D_MS_COM, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_com},
+    {J3D_MS_DCO, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_dco},
+    {J3D_MS_ATK, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_atk},
+    {0, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_unk}
+    /*, -->must define the j3d_read functions
+    {J3D_MS_CBD, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_cbd},
+    {J3D_MS_MCT, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mct},
+    {J3D_MS_MCC, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mcc},
+    {J3D_MS_MCO, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_mco},
+    {J3D_MS_NLT, J3D_STATE_MH | J3D_STATE_TPH, j3d_read_nlt},
+    {J3D_MS_VMS, J3D_STATE_MH, j3d_read_vms},
+    {J3D_MS_DFS, J3D_STATE_MH, j3d_read_dfs},
+    {J3D_MS_ADS, J3D_STATE_MH, j3d_read_ads},
+    {J3D_MS_QPD, J3D_STATE_MH, j3d_read_qpd},
+    {J3D_MS_QPC, J3D_STATE_TPH, j3d_read_qpc}*/
 };
 
 /**
 Read the lookup table containing all the marker, status and action
 @param id Marker value
 */
-static opj_dec_mstabent_t *j3d_dec_mstab_lookup(int id) {
-       opj_dec_mstabent_t *e;
-       for (e = j3d_dec_mstab; e->id != 0; e++) {
-               if (e->id == id) {
-                       break;
-               }
-       }
-       return e;
+static opj_dec_mstabent_t *j3d_dec_mstab_lookup(int id)
+{
+    opj_dec_mstabent_t *e;
+    for (e = j3d_dec_mstab; e->id != 0; e++) {
+        if (e->id == id) {
+            break;
+        }
+    }
+    return e;
 }
 
 /* ----------------------------------------------------------------------- */
 /* J3D / JPT decoder interface                                             */
 /* ----------------------------------------------------------------------- */
 
-opj_j3d_t* j3d_create_decompress(opj_common_ptr cinfo) {
-       opj_j3d_t *j3d = (opj_j3d_t*)opj_malloc(sizeof(opj_j3d_t));
-       if(j3d) {
-               j3d->cinfo = cinfo;
-               j3d->default_tcp = (opj_tcp_t*)opj_malloc(sizeof(opj_tcp_t));
-               if(!j3d->default_tcp) {
-                       opj_free(j3d);
-                       return NULL;
-               }
-       }
-       return j3d;
-}
-
-void j3d_destroy_decompress(opj_j3d_t *j3d) {
-       int i = 0;
-
-       if(j3d->tile_len != NULL) {
-               opj_free(j3d->tile_len);
-       }
-       if(j3d->tile_data != NULL) {
-               opj_free(j3d->tile_data);
-       }
-       if(j3d->default_tcp != NULL) {
-               opj_tcp_t *default_tcp = j3d->default_tcp;
-               if(default_tcp->ppt_data_first != NULL) {
-                       opj_free(default_tcp->ppt_data_first);
-               }
-               if(j3d->default_tcp->tccps != NULL) {
-                       opj_free(j3d->default_tcp->tccps);
-               }
-               opj_free(j3d->default_tcp);
-       }
-       if(j3d->cp != NULL) {
-               opj_cp_t *cp = j3d->cp;
-               if(cp->tcps != NULL) {
-                       for(i = 0; i < cp->tw * cp->th * cp->tl; i++) {
-                               if(cp->tcps[i].ppt_data_first != NULL) {
-                                       opj_free(cp->tcps[i].ppt_data_first);
-                               }
-                               if(cp->tcps[i].tccps != NULL) {
-                                       opj_free(cp->tcps[i].tccps);
-                               }
-                       }
-                       opj_free(cp->tcps);
-               }
-               if(cp->ppm_data_first != NULL) {
-                       opj_free(cp->ppm_data_first);
-               }
-               if(cp->tileno != NULL) {
-                       opj_free(cp->tileno);  
-               }
-               if(cp->comment != NULL) {
-                       opj_free(cp->comment);
-               }
-
-               opj_free(cp);
-       }
-
-       opj_free(j3d);
-}
-
-void j3d_setup_decoder(opj_j3d_t *j3d, opj_dparameters_t *parameters) {
-       if(j3d && parameters) {
-               /* create and initialize the coding parameters structure */
-               opj_cp_t *cp = (opj_cp_t*)opj_malloc(sizeof(opj_cp_t));
-               cp->reduce[0] = parameters->cp_reduce[0];
-               cp->reduce[1] = parameters->cp_reduce[1];
-               cp->reduce[2] = parameters->cp_reduce[2];
-               cp->layer = parameters->cp_layer;
-               cp->bigendian = parameters->bigendian;
-
-    /* MM: Settings of the following two member variables would take
-      place during j3d_read_com. FIXME */
-               cp->encoding_format = ENCOD_3EB;
-               cp->transform_format = TRF_2D_DWT;
-
-               /* keep a link to cp so that we can destroy it later in j3d_destroy_decompress */
-               j3d->cp = cp;
-       }
-}
-
-opj_volume_t* j3d_decode(opj_j3d_t *j3d, opj_cio_t *cio) {
-       opj_volume_t *volume = NULL;
-
-       opj_common_ptr cinfo = j3d->cinfo;
-
-       j3d->cio = cio;
-
-       /* create an empty volume */
-       volume = (opj_volume_t*)opj_malloc(sizeof(opj_volume_t));
-       j3d->volume = volume;
-
-       j3d->state = J3D_STATE_MHSOC;
-       
-       for (;;) {
-               opj_dec_mstabent_t *e;
-               int id = cio_read(cio, 2);
-               if (id >> 8 != 0xff) {
-                       opj_volume_destroy(volume);
-                       opj_event_msg(cinfo, EVT_ERROR, "%.8x: expected a marker instead of %x\n", cio_tell(cio) - 2, id);
-                       return 0;
-               }
-               e = j3d_dec_mstab_lookup(id);
-               /*opj_event_msg(cinfo, EVT_INFO, "MARKER %x PREVSTATE %d E->STATE %d\n",e->id,j3d->state,e->states);*/
-               if (!(j3d->state & e->states)) {
-                       opj_volume_destroy(volume);
-                       opj_event_msg(cinfo, EVT_ERROR, "%.8x: unexpected marker %x\n", cio_tell(cio) - 2, id);
-                       return 0;
-               }
-               if (e->handler) {
-                       (*e->handler)(j3d);
-               }
-               /*opj_event_msg(cinfo, EVT_INFO, "POSTSTATE %d\n",j3d->state);*/
-               if (j3d->state == J3D_STATE_MT) {
-                       break;
-               }
-               if (j3d->state == J3D_STATE_NEOC) {
-                       break;
-               }
-       }
-       if (j3d->state == J3D_STATE_NEOC) {
-               j3d_read_eoc(j3d);
-       }
-
-       if (j3d->state != J3D_STATE_MT) {
-               opj_event_msg(cinfo, EVT_WARNING, "Incomplete bitstream\n");
-       }
-       
-       return volume;
+opj_j3d_t* j3d_create_decompress(opj_common_ptr cinfo)
+{
+    opj_j3d_t *j3d = (opj_j3d_t*)opj_malloc(sizeof(opj_j3d_t));
+    if (j3d) {
+        j3d->cinfo = cinfo;
+        j3d->default_tcp = (opj_tcp_t*)opj_malloc(sizeof(opj_tcp_t));
+        if (!j3d->default_tcp) {
+            opj_free(j3d);
+            return NULL;
+        }
+    }
+    return j3d;
+}
+
+void j3d_destroy_decompress(opj_j3d_t *j3d)
+{
+    int i = 0;
+
+    if (j3d->tile_len != NULL) {
+        opj_free(j3d->tile_len);
+    }
+    if (j3d->tile_data != NULL) {
+        opj_free(j3d->tile_data);
+    }
+    if (j3d->default_tcp != NULL) {
+        opj_tcp_t *default_tcp = j3d->default_tcp;
+        if (default_tcp->ppt_data_first != NULL) {
+            opj_free(default_tcp->ppt_data_first);
+        }
+        if (j3d->default_tcp->tccps != NULL) {
+            opj_free(j3d->default_tcp->tccps);
+        }
+        opj_free(j3d->default_tcp);
+    }
+    if (j3d->cp != NULL) {
+        opj_cp_t *cp = j3d->cp;
+        if (cp->tcps != NULL) {
+            for (i = 0; i < cp->tw * cp->th * cp->tl; i++) {
+                if (cp->tcps[i].ppt_data_first != NULL) {
+                    opj_free(cp->tcps[i].ppt_data_first);
+                }
+                if (cp->tcps[i].tccps != NULL) {
+                    opj_free(cp->tcps[i].tccps);
+                }
+            }
+            opj_free(cp->tcps);
+        }
+        if (cp->ppm_data_first != NULL) {
+            opj_free(cp->ppm_data_first);
+        }
+        if (cp->tileno != NULL) {
+            opj_free(cp->tileno);
+        }
+        if (cp->comment != NULL) {
+            opj_free(cp->comment);
+        }
+
+        opj_free(cp);
+    }
+
+    opj_free(j3d);
+}
+
+void j3d_setup_decoder(opj_j3d_t *j3d, opj_dparameters_t *parameters)
+{
+    if (j3d && parameters) {
+        /* create and initialize the coding parameters structure */
+        opj_cp_t *cp = (opj_cp_t*)opj_malloc(sizeof(opj_cp_t));
+        cp->reduce[0] = parameters->cp_reduce[0];
+        cp->reduce[1] = parameters->cp_reduce[1];
+        cp->reduce[2] = parameters->cp_reduce[2];
+        cp->layer = parameters->cp_layer;
+        cp->bigendian = parameters->bigendian;
+
+        /* MM: Settings of the following two member variables would take
+          place during j3d_read_com. FIXME */
+        cp->encoding_format = ENCOD_3EB;
+        cp->transform_format = TRF_2D_DWT;
+
+        /* keep a link to cp so that we can destroy it later in j3d_destroy_decompress */
+        j3d->cp = cp;
+    }
+}
+
+opj_volume_t* j3d_decode(opj_j3d_t *j3d, opj_cio_t *cio)
+{
+    opj_volume_t *volume = NULL;
+
+    opj_common_ptr cinfo = j3d->cinfo;
+
+    j3d->cio = cio;
+
+    /* create an empty volume */
+    volume = (opj_volume_t*)opj_malloc(sizeof(opj_volume_t));
+    j3d->volume = volume;
+
+    j3d->state = J3D_STATE_MHSOC;
+
+    for (;;) {
+        opj_dec_mstabent_t *e;
+        int id = cio_read(cio, 2);
+        if (id >> 8 != 0xff) {
+            opj_volume_destroy(volume);
+            opj_event_msg(cinfo, EVT_ERROR, "%.8x: expected a marker instead of %x\n",
+                          cio_tell(cio) - 2, id);
+            return 0;
+        }
+        e = j3d_dec_mstab_lookup(id);
+        /*opj_event_msg(cinfo, EVT_INFO, "MARKER %x PREVSTATE %d E->STATE %d\n",e->id,j3d->state,e->states);*/
+        if (!(j3d->state & e->states)) {
+            opj_volume_destroy(volume);
+            opj_event_msg(cinfo, EVT_ERROR, "%.8x: unexpected marker %x\n",
+                          cio_tell(cio) - 2, id);
+            return 0;
+        }
+        if (e->handler) {
+            (*e->handler)(j3d);
+        }
+        /*opj_event_msg(cinfo, EVT_INFO, "POSTSTATE %d\n",j3d->state);*/
+        if (j3d->state == J3D_STATE_MT) {
+            break;
+        }
+        if (j3d->state == J3D_STATE_NEOC) {
+            break;
+        }
+    }
+    if (j3d->state == J3D_STATE_NEOC) {
+        j3d_read_eoc(j3d);
+    }
+
+    if (j3d->state != J3D_STATE_MT) {
+        opj_event_msg(cinfo, EVT_WARNING, "Incomplete bitstream\n");
+    }
+
+    return volume;
 }
 
 /* ----------------------------------------------------------------------- */
 /* J3D encoder interface                                                       */
 /* ----------------------------------------------------------------------- */
 
-opj_j3d_t* j3d_create_compress(opj_common_ptr cinfo) {
-       opj_j3d_t *j3d = (opj_j3d_t*)opj_malloc(sizeof(opj_j3d_t));
-       if(j3d) {
-               j3d->cinfo = cinfo;
-       }
-       return j3d;
-}
-
-void j3d_destroy_compress(opj_j3d_t *j3d) {
-       int tileno;
-
-       if(!j3d) return;
-
-       if(j3d->volume_info != NULL) {
-               opj_volume_info_t *volume_info = j3d->volume_info;
-               if (volume_info->index_on && j3d->cp) {
-                       opj_cp_t *cp = j3d->cp;
-                       for (tileno = 0; tileno < cp->tw * cp->th; tileno++) {
-                               opj_tile_info_t *tile_info = &volume_info->tile[tileno];
-                               opj_free(tile_info->thresh);
-                               opj_free(tile_info->packet);
-                       }
-                       opj_free(volume_info->tile);
-               }
-               opj_free(volume_info);
-       }
-       if(j3d->cp != NULL) {
-               opj_cp_t *cp = j3d->cp;
-
-               if(cp->comment) {
-                       opj_free(cp->comment);
-               }
-               if(cp->matrice) {
-                       opj_free(cp->matrice);
-               }
-               for (tileno = 0; tileno < cp->tw * cp->th; tileno++) {
-                       opj_free(cp->tcps[tileno].tccps);
-               }
-               opj_free(cp->tcps);
-               opj_free(cp);
-       }
-
-       opj_free(j3d);
-}
-
-void j3d_setup_encoder(opj_j3d_t *j3d, opj_cparameters_t *parameters, opj_volume_t *volume) {
-       int i, j, tileno, numpocs_tile;
-       opj_cp_t *cp = NULL;
-
-       if(!j3d || !parameters || ! volume) {
-               return;
-       }
-
-       /* create and initialize the coding parameters structure */
-       cp = (opj_cp_t*)opj_malloc(sizeof(opj_cp_t));
-
-       /* keep a link to cp so that we can destroy it later in j3d_destroy_compress */
-       j3d->cp = cp;
-
-       /* set default values for cp */
-       cp->tw = 1;
-       cp->th = 1;
-       cp->tl = 1;
-
-       /* copy user encoding parameters */
-       cp->disto_alloc = parameters->cp_disto_alloc;
-       cp->fixed_alloc = parameters->cp_fixed_alloc;
-       cp->fixed_quality = parameters->cp_fixed_quality;
-
-       /* transform and coding method */
-       cp->transform_format = parameters->transform_format;
-       cp->encoding_format = parameters->encoding_format;
-
-       /* mod fixed_quality */
-       if(parameters->cp_matrice) {
-               size_t array_size = parameters->tcp_numlayers * 3 * parameters->numresolution[0] * sizeof(int);
-               cp->matrice = (int *) opj_malloc(array_size);
-               memcpy(cp->matrice, parameters->cp_matrice, array_size);
-       } 
-
-       /* creation of an index file ? */
-       cp->index_on = parameters->index_on;
-       if(cp->index_on) {
-               j3d->volume_info = (opj_volume_info_t*)opj_malloc(sizeof(opj_volume_info_t));
-       }
-       
-       /* tiles */
-       cp->tdx = parameters->cp_tdx;
-       cp->tdy = parameters->cp_tdy;
-       cp->tdz = parameters->cp_tdz;
-       /* tile offset */
-       cp->tx0 = parameters->cp_tx0;
-       cp->ty0 = parameters->cp_ty0;
-       cp->tz0 = parameters->cp_tz0;
-       /* comment string */
-       if(parameters->cp_comment) {
-               cp->comment = (char*)opj_malloc(strlen(parameters->cp_comment) + 1);
-               if(cp->comment) {
-                       strcpy(cp->comment, parameters->cp_comment);
-               }
-       }
-
-       /*calculate other encoding parameters*/
-       if (parameters->tile_size_on) {
-               cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
-               cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
-               cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
-       } else {
-               cp->tdx = volume->x1 - cp->tx0;
-               cp->tdy = volume->y1 - cp->ty0;
-               cp->tdz = volume->z1 - cp->tz0;
-       }
-
-       /* initialize the multiple tiles */
-       /* ---------------------------- */
-       cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(opj_tcp_t));
-
-       for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
-               opj_tcp_t *tcp = &cp->tcps[tileno];
-               tcp->numlayers = parameters->tcp_numlayers;
-               for (j = 0; j < tcp->numlayers; j++) {
-                       if (cp->fixed_quality) {        /* add fixed_quality */
-                               tcp->distoratio[j] = parameters->tcp_distoratio[j];
-                       } else {
-                               tcp->rates[j] = parameters->tcp_rates[j];
-                       }
-               }
-               tcp->csty = parameters->csty;
-               tcp->prg = parameters->prog_order;
-               tcp->mct = volume->numcomps == 3 ? 1 : 0;
-
-               numpocs_tile = 0;
-               tcp->POC = 0;
-               if (parameters->numpocs) {
-                       /* initialisation of POC */
-                       tcp->POC = 1;
-                       for (i = 0; i < parameters->numpocs; i++) {
-                               if((tileno == parameters->POC[i].tile - 1) || (parameters->POC[i].tile == -1)) {
-                                       opj_poc_t *tcp_poc = &tcp->pocs[numpocs_tile];
-                                       tcp_poc->resno0         = parameters->POC[numpocs_tile].resno0;
-                                       tcp_poc->compno0        = parameters->POC[numpocs_tile].compno0;
-                                       tcp_poc->layno1         = parameters->POC[numpocs_tile].layno1;
-                                       tcp_poc->resno1         = parameters->POC[numpocs_tile].resno1;
-                                       tcp_poc->compno1        = parameters->POC[numpocs_tile].compno1;
-                                       tcp_poc->prg            = parameters->POC[numpocs_tile].prg;
-                                       tcp_poc->tile           = parameters->POC[numpocs_tile].tile;
-                                       numpocs_tile++;
-                               }
-                       }
-               }
-               tcp->numpocs = numpocs_tile;
-
-               tcp->tccps = (opj_tccp_t *) opj_malloc(volume->numcomps * sizeof(opj_tccp_t));
-               
-               for (i = 0; i < volume->numcomps; i++) {
-                       opj_tccp_t *tccp = &tcp->tccps[i];
-                       tccp->csty = parameters->csty & J3D_CCP_CSTY_PRT;       /* 0 => standard precint || 1 => custom-defined precinct  */
-                       tccp->numresolution[0] = parameters->numresolution[0];
-                       tccp->numresolution[1] = parameters->numresolution[1];
-                       tccp->numresolution[2] = parameters->numresolution[2];
-                                               assert (parameters->cblock_init[0] <= T1_MAXCBLKW);
-                                               assert (parameters->cblock_init[0] >= T1_MINCBLKW);
-                                               assert (parameters->cblock_init[1] <= T1_MAXCBLKH);
-                                               assert (parameters->cblock_init[1] >= T1_MINCBLKH);
-                                               assert (parameters->cblock_init[2] <= T1_MAXCBLKD);
-                                               assert (parameters->cblock_init[2] >= T1_MINCBLKD);
-                       tccp->cblk[0] = int_floorlog2(parameters->cblock_init[0]); 
-                       tccp->cblk[1] = int_floorlog2(parameters->cblock_init[1]); 
-                       tccp->cblk[2] = int_floorlog2(parameters->cblock_init[2]); 
-                                               assert (tccp->cblk[0]+tccp->cblk[1]+tccp->cblk[1] <= T1_MAXWHD);
-                       tccp->cblksty = parameters->mode; /*Codeblock style --> Table A.19 (default 0)*/
-
-                       /*ATK / transform */
-                       tccp->reversible = parameters->irreversible ? 0 : 1; /* 0 => DWT 9-7 || 1 => DWT 5-3  */
-                       for (j = 0; j < 3; j++) {
-                                       tccp->dwtid[j] = parameters->irreversible ? 0 : 1; /* 0 => DWT 9-7 || 1 => DWT 5-3  */
-                       }
-                                               
-                       /* Quantification: SEQNT (Scalar Expounded, value for each subband) / NOQNT (no quant)*/
-                       tccp->qntsty = parameters->irreversible ? J3D_CCP_QNTSTY_SEQNT : J3D_CCP_QNTSTY_NOQNT;
-                       tccp->numgbits = 2;
-                       if (i == parameters->roi_compno) {
-                               tccp->roishift = parameters->roi_shift;
-                       } else {
-                               tccp->roishift = 0;
-                       }
-                       /* Custom defined precints */
-                       if (parameters->csty & J3D_CCP_CSTY_PRT) {
-                               int k;
-                               for (k = 0; k < 3; k++) {
-                                       int p = 0;
-                                       for (j = tccp->numresolution[k] - 1; j >= 0; j--) {
-                                               if (p < parameters->res_spec) {/* p < number of precinct size specifications */
-                                                       if (parameters->prct_init[k][p] < 1) {
-                                                               tccp->prctsiz[k][j] = 1;
-                                                       } else {
-                                                               tccp->prctsiz[k][j] = int_floorlog2(parameters->prct_init[k][p]);
-                                                       }
-                                               } else {
-                                                       int res_spec = parameters->res_spec;
-                                                       int size_prct = parameters->prct_init[k][res_spec - 1] >> (p - (res_spec - 1));
-                                                       if (size_prct < 1) {
-                                                               tccp->prctsiz[k][j] = 1;
-                                                       } else {
-                                                               tccp->prctsiz[k][j] = int_floorlog2(size_prct);
-                                                       }
-                                               }
-                                       }
-                                       p++;
-                               }
-                       } else {
-                               int k;
-                               for (k = 0; k < 3; k++) {
+opj_j3d_t* j3d_create_compress(opj_common_ptr cinfo)
+{
+    opj_j3d_t *j3d = (opj_j3d_t*)opj_malloc(sizeof(opj_j3d_t));
+    if (j3d) {
+        j3d->cinfo = cinfo;
+    }
+    return j3d;
+}
+
+void j3d_destroy_compress(opj_j3d_t *j3d)
+{
+    int tileno;
+
+    if (!j3d) {
+        return;
+    }
+
+    if (j3d->volume_info != NULL) {
+        opj_volume_info_t *volume_info = j3d->volume_info;
+        if (volume_info->index_on && j3d->cp) {
+            opj_cp_t *cp = j3d->cp;
+            for (tileno = 0; tileno < cp->tw * cp->th; tileno++) {
+                opj_tile_info_t *tile_info = &volume_info->tile[tileno];
+                opj_free(tile_info->thresh);
+                opj_free(tile_info->packet);
+            }
+            opj_free(volume_info->tile);
+        }
+        opj_free(volume_info);
+    }
+    if (j3d->cp != NULL) {
+        opj_cp_t *cp = j3d->cp;
+
+        if (cp->comment) {
+            opj_free(cp->comment);
+        }
+        if (cp->matrice) {
+            opj_free(cp->matrice);
+        }
+        for (tileno = 0; tileno < cp->tw * cp->th; tileno++) {
+            opj_free(cp->tcps[tileno].tccps);
+        }
+        opj_free(cp->tcps);
+        opj_free(cp);
+    }
+
+    opj_free(j3d);
+}
+
+void j3d_setup_encoder(opj_j3d_t *j3d, opj_cparameters_t *parameters,
+                       opj_volume_t *volume)
+{
+    int i, j, tileno, numpocs_tile;
+    opj_cp_t *cp = NULL;
+
+    if (!j3d || !parameters || ! volume) {
+        return;
+    }
+
+    /* create and initialize the coding parameters structure */
+    cp = (opj_cp_t*)opj_malloc(sizeof(opj_cp_t));
+
+    /* keep a link to cp so that we can destroy it later in j3d_destroy_compress */
+    j3d->cp = cp;
+
+    /* set default values for cp */
+    cp->tw = 1;
+    cp->th = 1;
+    cp->tl = 1;
+
+    /* copy user encoding parameters */
+    cp->disto_alloc = parameters->cp_disto_alloc;
+    cp->fixed_alloc = parameters->cp_fixed_alloc;
+    cp->fixed_quality = parameters->cp_fixed_quality;
+
+    /* transform and coding method */
+    cp->transform_format = parameters->transform_format;
+    cp->encoding_format = parameters->encoding_format;
+
+    /* mod fixed_quality */
+    if (parameters->cp_matrice) {
+        size_t array_size = parameters->tcp_numlayers * 3 * parameters->numresolution[0]
+                            * sizeof(int);
+        cp->matrice = (int *) opj_malloc(array_size);
+        memcpy(cp->matrice, parameters->cp_matrice, array_size);
+    }
+
+    /* creation of an index file ? */
+    cp->index_on = parameters->index_on;
+    if (cp->index_on) {
+        j3d->volume_info = (opj_volume_info_t*)opj_malloc(sizeof(opj_volume_info_t));
+    }
+
+    /* tiles */
+    cp->tdx = parameters->cp_tdx;
+    cp->tdy = parameters->cp_tdy;
+    cp->tdz = parameters->cp_tdz;
+    /* tile offset */
+    cp->tx0 = parameters->cp_tx0;
+    cp->ty0 = parameters->cp_ty0;
+    cp->tz0 = parameters->cp_tz0;
+    /* comment string */
+    if (parameters->cp_comment) {
+        cp->comment = (char*)opj_malloc(strlen(parameters->cp_comment) + 1);
+        if (cp->comment) {
+            strcpy(cp->comment, parameters->cp_comment);
+        }
+    }
+
+    /*calculate other encoding parameters*/
+    if (parameters->tile_size_on) {
+        cp->tw = int_ceildiv(volume->x1 - cp->tx0, cp->tdx);
+        cp->th = int_ceildiv(volume->y1 - cp->ty0, cp->tdy);
+        cp->tl = int_ceildiv(volume->z1 - cp->tz0, cp->tdz);
+    } else {
+        cp->tdx = volume->x1 - cp->tx0;
+        cp->tdy = volume->y1 - cp->ty0;
+        cp->tdz = volume->z1 - cp->tz0;
+    }
+
+    /* initialize the multiple tiles */
+    /* ---------------------------- */
+    cp->tcps = (opj_tcp_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(
+                                            opj_tcp_t));
+
+    for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
+        opj_tcp_t *tcp = &cp->tcps[tileno];
+        tcp->numlayers = parameters->tcp_numlayers;
+        for (j = 0; j < tcp->numlayers; j++) {
+            if (cp->fixed_quality) {    /* add fixed_quality */
+                tcp->distoratio[j] = parameters->tcp_distoratio[j];
+            } else {
+                tcp->rates[j] = parameters->tcp_rates[j];
+            }
+        }
+        tcp->csty = parameters->csty;
+        tcp->prg = parameters->prog_order;
+        tcp->mct = volume->numcomps == 3 ? 1 : 0;
+
+        numpocs_tile = 0;
+        tcp->POC = 0;
+        if (parameters->numpocs) {
+            /* initialisation of POC */
+            tcp->POC = 1;
+            for (i = 0; i < parameters->numpocs; i++) {
+                if ((tileno == parameters->POC[i].tile - 1) ||
+                        (parameters->POC[i].tile == -1)) {
+                    opj_poc_t *tcp_poc = &tcp->pocs[numpocs_tile];
+                    tcp_poc->resno0     = parameters->POC[numpocs_tile].resno0;
+                    tcp_poc->compno0    = parameters->POC[numpocs_tile].compno0;
+                    tcp_poc->layno1     = parameters->POC[numpocs_tile].layno1;
+                    tcp_poc->resno1     = parameters->POC[numpocs_tile].resno1;
+                    tcp_poc->compno1    = parameters->POC[numpocs_tile].compno1;
+                    tcp_poc->prg        = parameters->POC[numpocs_tile].prg;
+                    tcp_poc->tile       = parameters->POC[numpocs_tile].tile;
+                    numpocs_tile++;
+                }
+            }
+        }
+        tcp->numpocs = numpocs_tile;
+
+        tcp->tccps = (opj_tccp_t *) opj_malloc(volume->numcomps * sizeof(opj_tccp_t));
+
+        for (i = 0; i < volume->numcomps; i++) {
+            opj_tccp_t *tccp = &tcp->tccps[i];
+            tccp->csty = parameters->csty &
+                         J3D_CCP_CSTY_PRT;   /* 0 => standard precint || 1 => custom-defined precinct  */
+            tccp->numresolution[0] = parameters->numresolution[0];
+            tccp->numresolution[1] = parameters->numresolution[1];
+            tccp->numresolution[2] = parameters->numresolution[2];
+            assert(parameters->cblock_init[0] <= T1_MAXCBLKW);
+            assert(parameters->cblock_init[0] >= T1_MINCBLKW);
+            assert(parameters->cblock_init[1] <= T1_MAXCBLKH);
+            assert(parameters->cblock_init[1] >= T1_MINCBLKH);
+            assert(parameters->cblock_init[2] <= T1_MAXCBLKD);
+            assert(parameters->cblock_init[2] >= T1_MINCBLKD);
+            tccp->cblk[0] = int_floorlog2(parameters->cblock_init[0]);
+            tccp->cblk[1] = int_floorlog2(parameters->cblock_init[1]);
+            tccp->cblk[2] = int_floorlog2(parameters->cblock_init[2]);
+            assert(tccp->cblk[0] + tccp->cblk[1] + tccp->cblk[1] <= T1_MAXWHD);
+            tccp->cblksty = parameters->mode; /*Codeblock style --> Table A.19 (default 0)*/
+
+            /*ATK / transform */
+            tccp->reversible = parameters->irreversible ? 0 :
+                               1; /* 0 => DWT 9-7 || 1 => DWT 5-3  */
+            for (j = 0; j < 3; j++) {
+                tccp->dwtid[j] = parameters->irreversible ? 0 :
+                                 1; /* 0 => DWT 9-7 || 1 => DWT 5-3  */
+            }
+
+            /* Quantification: SEQNT (Scalar Expounded, value for each subband) / NOQNT (no quant)*/
+            tccp->qntsty = parameters->irreversible ? J3D_CCP_QNTSTY_SEQNT :
+                           J3D_CCP_QNTSTY_NOQNT;
+            tccp->numgbits = 2;
+            if (i == parameters->roi_compno) {
+                tccp->roishift = parameters->roi_shift;
+            } else {
+                tccp->roishift = 0;
+            }
+            /* Custom defined precints */
+            if (parameters->csty & J3D_CCP_CSTY_PRT) {
+                int k;
+                for (k = 0; k < 3; k++) {
+                    int p = 0;
+                    for (j = tccp->numresolution[k] - 1; j >= 0; j--) {
+                        if (p < parameters->res_spec) {/* p < number of precinct size specifications */
+                            if (parameters->prct_init[k][p] < 1) {
+                                tccp->prctsiz[k][j] = 1;
+                            } else {
+                                tccp->prctsiz[k][j] = int_floorlog2(parameters->prct_init[k][p]);
+                            }
+                        } else {
+                            int res_spec = parameters->res_spec;
+                            int size_prct = parameters->prct_init[k][res_spec - 1] >> (p - (res_spec - 1));
+                            if (size_prct < 1) {
+                                tccp->prctsiz[k][j] = 1;
+                            } else {
+                                tccp->prctsiz[k][j] = int_floorlog2(size_prct);
+                            }
+                        }
+                    }
+                    p++;
+                }
+            } else {
+                int k;
+                for (k = 0; k < 3; k++) {
                     for (j = 0; j < tccp->numresolution[k]; j++) {
                         tccp->prctsiz[k][j] = 15;
-                                       }
-                               }
-                       }
-                       /*Calcular stepsize for each subband (if NOQNT -->stepsize = 1.0)*/
-                       dwt_calc_explicit_stepsizes(tccp, volume->comps[i].prec);
-               }
-       }
+                    }
+                }
+            }
+            /*Calcular stepsize for each subband (if NOQNT -->stepsize = 1.0)*/
+            dwt_calc_explicit_stepsizes(tccp, volume->comps[i].prec);
+        }
+    }
 }
 
 /**
@@ -1986,371 +2135,421 @@ Create an index file
 @param index Index filename
 @return Returns 1 if successful, returns 0 otherwise
 */
-static int j3d_create_index(opj_j3d_t *j3d, opj_cio_t *cio, opj_volume_info_t *volume_info, char *index) {
-       
-       int tileno, compno, layno, resno, precno, pack_nb, x, y, z;
-       FILE *stream = NULL;
-       double total_disto = 0;
-
-       volume_info->codestream_size = cio_tell(cio) + j3d->pos_correction;     /* Correction 14/4/03 suite rmq de Patrick */
-
-       stream = fopen(index, "w");
-       if (!stream) {
-               opj_event_msg(j3d->cinfo, EVT_ERROR, "failed to open %s for writing\n", index);
-               return 0;
-       }
-       
-       fprintf(stream, "w %d\t h %d\t l %d\n", volume_info->volume_w, volume_info->volume_h, volume_info->volume_l);
-       fprintf(stream, "TRASNFORM\t%d\n", volume_info->transform_format);
-       fprintf(stream, "ENTROPY CODING\t%d\n", volume_info->encoding_format);
-       fprintf(stream, "PROG\t%d\n", volume_info->prog);
-       fprintf(stream, "TILE\tx %d y %d z %d\n", volume_info->tile_x, volume_info->tile_y, volume_info->tile_z);
-       fprintf(stream, "NOTILE\tx %d y %d z %d\n", volume_info->tw, volume_info->th, volume_info->tl);
-       fprintf(stream, "COMPONENTS\t%d\n", volume_info->comp);
-       fprintf(stream, "LAYER\t%d\n", volume_info->layer);
-       fprintf(stream, "RESOLUTIONS\tx %d y %d z %d\n", volume_info->decomposition[0], volume_info->decomposition[1], volume_info->decomposition[2]);
-       
-       fprintf(stream, "Precint sizes for each resolution:\n");
-       for (resno = volume_info->decomposition[0]; resno >= 0; resno--) {
-               fprintf(stream, "Resno %d \t [%d,%d,%d] \n", resno,
-                       (1 << volume_info->tile[0].prctsiz[0][resno]), (1 << volume_info->tile[0].prctsiz[0][resno]), (1 << volume_info->tile[0].prctsiz[2][resno]));   /* based on tile 0 */
-       }
-       fprintf(stream, "HEADER_END\t%d\n", volume_info->main_head_end);
-       fprintf(stream, "CODESTREAM\t%d\n", volume_info->codestream_size);
-       fprintf(stream, "Num_tile Start_pos End_header End_pos Distotile Nbpix Ratio\n");
-       for (tileno = 0; tileno < (volume_info->tw * volume_info->th * volume_info->tl); tileno++) {
-               fprintf(stream, "%4d\t%9d\t%9d\t%9d\t%9e\t%9d\t%9e\n",
-                       volume_info->tile[tileno].num_tile,
-                       volume_info->tile[tileno].start_pos,
-                       volume_info->tile[tileno].end_header,
-                       volume_info->tile[tileno].end_pos,
-                       volume_info->tile[tileno].distotile, volume_info->tile[tileno].nbpix,
-                       volume_info->tile[tileno].distotile / volume_info->tile[tileno].nbpix);
-       }
-       
-       for (tileno = 0; tileno < (volume_info->tw * volume_info->th * volume_info->tl); tileno++) {
-               int start_pos, end_pos;
-               double disto = 0;
-               pack_nb = 0;
-               if (volume_info->prog == LRCP) {        /* LRCP */
-                       fprintf(stream, "pack_nb tileno layno resno compno precno start_pos  end_pos   disto\n");
-                       for (layno = 0; layno < volume_info->layer; layno++) {
-                               for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
-                                       for (compno = 0; compno < volume_info->comp; compno++) {
-                                               int prec_max = volume_info->tile[tileno].prctno[0][resno] * volume_info->tile[tileno].prctno[1][resno] * volume_info->tile[tileno].prctno[2][resno];
-                                               for (precno = 0; precno < prec_max; precno++) {
-                                                       start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
-                                                       end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
-                                                       disto = volume_info->tile[tileno].packet[pack_nb].disto;
-                                                       fprintf(stream, "%4d %6d %7d %5d %6d %6d %9d %9d %8e\n",pack_nb, tileno, layno, resno, compno, precno, start_pos, end_pos, disto);
-                                                       total_disto += disto;
-                                                       pack_nb++;
-                                               }
-                                       }
-                               }
-                       }
-               } /* LRCP */
-               else if (volume_info->prog == RLCP) {   /* RLCP */
-                       /*
-                       fprintf(stream, "pack_nb tileno resno layno compno precno start_pos  end_pos   disto");
-                       */
-                       for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
-                               for (layno = 0; layno < volume_info->layer; layno++) {
-                                       for (compno = 0; compno < volume_info->comp; compno++) {
-                                               int prec_max = volume_info->tile[tileno].prctno[0][resno] * volume_info->tile[tileno].prctno[1][resno]* volume_info->tile[tileno].prctno[2][resno];
-                                               for (precno = 0; precno < prec_max; precno++) {
-                                                       start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
-                                                       end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
-                                                       disto = volume_info->tile[tileno].packet[pack_nb].disto;
-                                                       fprintf(stream, "%4d %6d %5d %7d %6d %6d %9d %9d %8e\n",
-                                                               pack_nb, tileno, resno, layno, compno, precno, start_pos, end_pos, disto);
-                                                       total_disto += disto;
-                                                       pack_nb++;
-                                               }
-                                       }
-                               }
-                       }
-               } /* RLCP */
-               else if (volume_info->prog == RPCL) {   /* RPCL */
-                       /*
-                       fprintf(stream, "\npack_nb tileno resno precno compno layno start_pos  end_pos   disto\n"); 
-                       */
-                       for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
-                               /* I suppose components have same XRsiz, YRsiz */
-                               /*int x0 = volume_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tw * volume_info->tile_x;*/
-                               /*int y0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_y;*/
-                               int x0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_x;
-                               int y0 = volume_info->tile_Oy + (int)floor( (float)tileno/(float)volume_info->th ) * volume_info->tile_y;
-                               int z0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tl ) * volume_info->tile_z;
-                               int x1 = x0 + volume_info->tile_x;
-                               int y1 = y0 + volume_info->tile_y;
-                               int z1 = z0 + volume_info->tile_z;
-                               for(z = z0; z < z1; z++) {
-                                       for(y = y0; y < y1; y++) {
-                                               for(x = x0; x < x1; x++) {
-                                                       for (compno = 0; compno < volume_info->comp; compno++) {
-                                                               int prec_max = volume_info->tile[tileno].prctno[0][resno] * volume_info->tile[tileno].prctno[1][resno] * volume_info->tile[tileno].prctno[2][resno];
-                                                               for (precno = 0; precno < prec_max; precno++) {
-                                                                       int pcnx = volume_info->tile[tileno].prctno[0][resno];
-                                                                       int pcx = (int) pow( 2, volume_info->tile[tileno].prctsiz[0][resno] + volume_info->decomposition[0] - resno );
-                                                                       int pcy = (int) pow( 2, volume_info->tile[tileno].prctsiz[1][resno] + volume_info->decomposition[1] - resno );
-                                                                       int pcz = (int) pow( 2, volume_info->tile[tileno].prctsiz[2][resno] + volume_info->decomposition[2] - resno );
-                                                                       int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
-                                                                       int precno_y = (int) floor( (float)precno/(float)pcnx );
-                                                                       if (precno_y*pcy == y ) {
-                                                                               if (precno_x*pcx == x ) {
-                                                                                       for (layno = 0; layno < volume_info->layer; layno++) {
-                                                                                               start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
-                                                                                               end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
-                                                                                               disto = volume_info->tile[tileno].packet[pack_nb].disto;
-                                                                                               fprintf(stream, "%4d %6d %5d %6d %6d %7d %9d %9d %8e\n",
-                                                                                                       pack_nb, tileno, resno, precno, compno, layno, start_pos, end_pos, disto); 
-                                                                                               total_disto += disto;
-                                                                                               pack_nb++; 
-                                                                                       }
-                                                                               }
-                                                                       }
-                                                               } /* precno */
-                                                       } /* compno */
-                                               } /* x = x0..x1 */
-                                       } /* y = y0..y1 */
-                               } /* z = z0..z1 */
-                       } /* resno */
-               } /* RPCL */
-               else if (volume_info->prog == PCRL) {   /* PCRL */
-                       /* I suppose components have same XRsiz, YRsiz */
-                       int x0 = volume_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tw * volume_info->tile_x;
-                       int y0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_y;
-                       int z0 = volume_info->tile_Oz + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_z;
-                       int x1 = x0 + volume_info->tile_x;
-                       int y1 = y0 + volume_info->tile_y;
-                       int z1 = z0 + volume_info->tile_z;
-                       /*
-                       fprintf(stream, "\npack_nb tileno precno compno resno layno start_pos  end_pos   disto\n"); 
-                       */
-                       for(z = z0; z < z1; z++) {
-                               for(y = y0; y < y1; y++) {
-                                       for(x = x0; x < x1; x++) {
-                                               for (compno = 0; compno < volume_info->comp; compno++) {
-                                                       for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
-                                                               int prec_max = volume_info->tile[tileno].prctno[0][resno] * volume_info->tile[tileno].prctno[1][resno];
-                                                               for (precno = 0; precno < prec_max; precno++) {
-                                                               int pcnx = volume_info->tile[tileno].prctno[0][resno];
-                                                               int pcx = (int) pow( 2, volume_info->tile[tileno].prctsiz[0][resno] + volume_info->decomposition[0] - resno );
-                                                               int pcy = (int) pow( 2, volume_info->tile[tileno].prctsiz[1][resno] + volume_info->decomposition[1] - resno );
-                                                               int pcz = (int) pow( 2, volume_info->tile[tileno].prctsiz[2][resno] + volume_info->decomposition[2] - resno );
-                                                               int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
-                                                               int precno_y = (int) floor( (float)precno/(float)pcnx );
-                                                               int precno_z = (int) floor( (float)precno/(float)pcnx );
-                                                               if (precno_z*pcz == z ) {
-                                                                       if (precno_y*pcy == y ) {
-                                                                               if (precno_x*pcx == x ) {
-                                                                                       for (layno = 0; layno < volume_info->layer; layno++) {
-                                                                                               start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
-                                                                                               end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
-                                                                                               disto = volume_info->tile[tileno].packet[pack_nb].disto;
-                                                                                               fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d %9d %8e\n",
-                                                                                                       pack_nb, tileno, precno, compno, resno, layno, start_pos, end_pos, disto); 
-                                                                                               total_disto += disto;
-                                                                                               pack_nb++; 
-                                                                                       }
-                                                                               }
-                                                                       }
-                                                               }
-                                                       } /* precno */
-                                               } /* resno */
-                                       } /* compno */
-                               } /* x = x0..x1 */
-                       } /* y = y0..y1 */
-                       }
-               } /* PCRL */
-               else {  /* CPRL */
-                       /*
-                       fprintf(stream, "\npack_nb tileno compno precno resno layno start_pos  end_pos   disto\n"); 
-                       */
-                       for (compno = 0; compno < volume_info->comp; compno++) {
-                               /* I suppose components have same XRsiz, YRsiz */
-                               int x0 = volume_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tw * volume_info->tile_x;
-                               int y0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_y;
-                               int z0 = volume_info->tile_Oz + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_z;
-                               int x1 = x0 + volume_info->tile_x;
-                               int y1 = y0 + volume_info->tile_y;
-                               int z1 = z0 + volume_info->tile_z;
-                               for(z = z0; z < z1; z++) {
-                                       for(y = y0; y < y1; y++) {
-                                               for(x = x0; x < x1; x++) {
-                                                       for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
-                                                               int prec_max = volume_info->tile[tileno].prctno[0][resno] * volume_info->tile[tileno].prctno[1][resno] * volume_info->tile[tileno].prctno[2][resno];
-                                                               for (precno = 0; precno < prec_max; precno++) {
-                                                                       int pcnx = volume_info->tile[tileno].prctno[0][resno];
-                                                                       int pcny = volume_info->tile[tileno].prctno[1][resno];
-                                                                       int pcx = (int) pow( 2, volume_info->tile[tileno].prctsiz[0][resno] + volume_info->decomposition[0] - resno );
-                                                                       int pcy = (int) pow( 2, volume_info->tile[tileno].prctsiz[1][resno] + volume_info->decomposition[1] - resno );
-                                                                       int pcz = (int) pow( 2, volume_info->tile[tileno].prctsiz[2][resno] + volume_info->decomposition[2] - resno );
-                                                                       int precno_x = precno - (int) floor( (float)precno/(float)pcnx ) * pcnx;
-                                                                       int precno_y = (int) floor( (float)precno/(float)pcnx );
-                                                                       int precno_z = 0; /*???*/
-                                                                       if (precno_z*pcz == z ) {
-                                                                               if (precno_y*pcy == y ) {
-                                                                                       if (precno_x*pcx == x ) {
-                                                                                               for (layno = 0; layno < volume_info->layer; layno++) {
-                                                                                                       start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
-                                                                                                       end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
-                                                                                                       disto = volume_info->tile[tileno].packet[pack_nb].disto;
-                                                                                                       fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d %9d %8e\n",
-                                                                                                               pack_nb, tileno, compno, precno, resno, layno, start_pos, end_pos, disto); 
-                                                                                                       total_disto += disto;
-                                                                                                       pack_nb++; 
-                                                                                               }
-                                                                                       }
-                                                                               }
-                                                                       }
-                                                               } /* precno */
-                                                       } /* resno */
-                                               } /* x = x0..x1 */
-                                       } /* y = y0..y1 */
-                               } /* z = z0..z1 */
-                       } /* comno */
-               } /* CPRL */   
-       } /* tileno */
-       
-       fprintf(stream, "SE_MAX\t%8e\n", volume_info->D_max);   /* SE max */
-       fprintf(stream, "SE_TOTAL\t%.8e\n", total_disto);                       /* SE totale */
-       
-
-       fclose(stream);
-
-       return 1;
-}
-
-bool j3d_encode(opj_j3d_t *j3d, opj_cio_t *cio, opj_volume_t *volume, char *index) {
-       int tileno, compno;
-       opj_volume_info_t *volume_info = NULL;
-       opj_cp_t *cp = NULL;
-       opj_tcd_t *tcd = NULL;  /* TCD component */
-
-       j3d->cio = cio; 
-       j3d->volume = volume;
-       cp = j3d->cp;
-
-       /*j3d_dump_volume(stdout, volume);
-       j3d_dump_cp(stdout, volume, cp);*/
-
-       /* INDEX >> */
-       volume_info = j3d->volume_info;
-       if (volume_info && cp->index_on) {
-               volume_info->index_on = cp->index_on;
-               volume_info->tile = (opj_tile_info_t *) opj_malloc(cp->tw * cp->th * cp->tl * sizeof(opj_tile_info_t));
-               volume_info->volume_w = volume->x1 - volume->x0;
-               volume_info->volume_h = volume->y1 - volume->y0;
-               volume_info->volume_l = volume->z1 - volume->z0;
-               volume_info->prog = (&cp->tcps[0])->prg;
-               volume_info->tw = cp->tw;
-               volume_info->th = cp->th;
-               volume_info->tl = cp->tl;
-               volume_info->tile_x = cp->tdx;  /* new version parser */
-               volume_info->tile_y = cp->tdy;  /* new version parser */
-               volume_info->tile_z = cp->tdz;  /* new version parser */
-               volume_info->tile_Ox = cp->tx0; /* new version parser */
-               volume_info->tile_Oy = cp->ty0; /* new version parser */
-               volume_info->tile_Oz = cp->tz0; /* new version parser */
-               volume_info->transform_format = cp->transform_format;
-               volume_info->encoding_format = cp->encoding_format;
-               volume_info->comp = volume->numcomps;
-               volume_info->layer = (&cp->tcps[0])->numlayers;
-               volume_info->decomposition[0] = (&cp->tcps[0])->tccps->numresolution[0] - 1;
-               volume_info->decomposition[1] = (&cp->tcps[0])->tccps->numresolution[1] - 1;
-               volume_info->decomposition[2] = (&cp->tcps[0])->tccps->numresolution[2] - 1;
-               volume_info->D_max = 0;         /* ADD Marcela */
-       }
-       /* << INDEX */
-
-       j3d_write_soc(j3d);
-       j3d_write_siz(j3d);
-       if (j3d->cinfo->codec_format == CODEC_J3D) {
-               j3d_write_cap(j3d);
-               j3d_write_nsi(j3d);
-       }
-
-       /*if (j3d->cp->transform_format != TRF_2D_DWT || j3d->cp->encoding_format != ENCOD_2EB)*/
-               j3d_write_com(j3d);
-
-       j3d_write_cod(j3d);
-       j3d_write_qcd(j3d);
-       for (compno = 0; compno < volume->numcomps; compno++) {
-               opj_tcp_t *tcp = &cp->tcps[0];
-               if (tcp->tccps[compno].roishift)
-                       j3d_write_rgn(j3d, compno, 0);                  
-       }
-       /*Optional 15444-2 markers*/
-       if (j3d->cp->tcps->tccps[0].atk != NULL)
+static int j3d_create_index(opj_j3d_t *j3d, opj_cio_t *cio,
+                            opj_volume_info_t *volume_info, char *index)
+{
+
+    int tileno, compno, layno, resno, precno, pack_nb, x, y, z;
+    FILE *stream = NULL;
+    double total_disto = 0;
+
+    volume_info->codestream_size = cio_tell(cio) +
+                                   j3d->pos_correction; /* Correction 14/4/03 suite rmq de Patrick */
+
+    stream = fopen(index, "w");
+    if (!stream) {
+        opj_event_msg(j3d->cinfo, EVT_ERROR, "failed to open %s for writing\n", index);
+        return 0;
+    }
+
+    fprintf(stream, "w %d\t h %d\t l %d\n", volume_info->volume_w,
+            volume_info->volume_h, volume_info->volume_l);
+    fprintf(stream, "TRASNFORM\t%d\n", volume_info->transform_format);
+    fprintf(stream, "ENTROPY CODING\t%d\n", volume_info->encoding_format);
+    fprintf(stream, "PROG\t%d\n", volume_info->prog);
+    fprintf(stream, "TILE\tx %d y %d z %d\n", volume_info->tile_x,
+            volume_info->tile_y, volume_info->tile_z);
+    fprintf(stream, "NOTILE\tx %d y %d z %d\n", volume_info->tw, volume_info->th,
+            volume_info->tl);
+    fprintf(stream, "COMPONENTS\t%d\n", volume_info->comp);
+    fprintf(stream, "LAYER\t%d\n", volume_info->layer);
+    fprintf(stream, "RESOLUTIONS\tx %d y %d z %d\n", volume_info->decomposition[0],
+            volume_info->decomposition[1], volume_info->decomposition[2]);
+
+    fprintf(stream, "Precint sizes for each resolution:\n");
+    for (resno = volume_info->decomposition[0]; resno >= 0; resno--) {
+        fprintf(stream, "Resno %d \t [%d,%d,%d] \n", resno,
+                (1 << volume_info->tile[0].prctsiz[0][resno]),
+                (1 << volume_info->tile[0].prctsiz[0][resno]),
+                (1 << volume_info->tile[0].prctsiz[2][resno]));   /* based on tile 0 */
+    }
+    fprintf(stream, "HEADER_END\t%d\n", volume_info->main_head_end);
+    fprintf(stream, "CODESTREAM\t%d\n", volume_info->codestream_size);
+    fprintf(stream,
+            "Num_tile Start_pos End_header End_pos Distotile Nbpix Ratio\n");
+    for (tileno = 0; tileno < (volume_info->tw * volume_info->th * volume_info->tl);
+            tileno++) {
+        fprintf(stream, "%4d\t%9d\t%9d\t%9d\t%9e\t%9d\t%9e\n",
+                volume_info->tile[tileno].num_tile,
+                volume_info->tile[tileno].start_pos,
+                volume_info->tile[tileno].end_header,
+                volume_info->tile[tileno].end_pos,
+                volume_info->tile[tileno].distotile, volume_info->tile[tileno].nbpix,
+                volume_info->tile[tileno].distotile / volume_info->tile[tileno].nbpix);
+    }
+
+    for (tileno = 0; tileno < (volume_info->tw * volume_info->th * volume_info->tl);
+            tileno++) {
+        int start_pos, end_pos;
+        double disto = 0;
+        pack_nb = 0;
+        if (volume_info->prog == LRCP) {    /* LRCP */
+            fprintf(stream,
+                    "pack_nb tileno layno resno compno precno start_pos  end_pos   disto\n");
+            for (layno = 0; layno < volume_info->layer; layno++) {
+                for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
+                    for (compno = 0; compno < volume_info->comp; compno++) {
+                        int prec_max = volume_info->tile[tileno].prctno[0][resno] *
+                                       volume_info->tile[tileno].prctno[1][resno] *
+                                       volume_info->tile[tileno].prctno[2][resno];
+                        for (precno = 0; precno < prec_max; precno++) {
+                            start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
+                            end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
+                            disto = volume_info->tile[tileno].packet[pack_nb].disto;
+                            fprintf(stream, "%4d %6d %7d %5d %6d %6d %9d %9d %8e\n", pack_nb, tileno, layno,
+                                    resno, compno, precno, start_pos, end_pos, disto);
+                            total_disto += disto;
+                            pack_nb++;
+                        }
+                    }
+                }
+            }
+        } /* LRCP */
+        else if (volume_info->prog == RLCP) {   /* RLCP */
+            /*
+            fprintf(stream, "pack_nb tileno resno layno compno precno start_pos  end_pos   disto");
+            */
+            for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
+                for (layno = 0; layno < volume_info->layer; layno++) {
+                    for (compno = 0; compno < volume_info->comp; compno++) {
+                        int prec_max = volume_info->tile[tileno].prctno[0][resno] *
+                                       volume_info->tile[tileno].prctno[1][resno] *
+                                       volume_info->tile[tileno].prctno[2][resno];
+                        for (precno = 0; precno < prec_max; precno++) {
+                            start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
+                            end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
+                            disto = volume_info->tile[tileno].packet[pack_nb].disto;
+                            fprintf(stream, "%4d %6d %5d %7d %6d %6d %9d %9d %8e\n",
+                                    pack_nb, tileno, resno, layno, compno, precno, start_pos, end_pos, disto);
+                            total_disto += disto;
+                            pack_nb++;
+                        }
+                    }
+                }
+            }
+        } /* RLCP */
+        else if (volume_info->prog == RPCL) {   /* RPCL */
+            /*
+            fprintf(stream, "\npack_nb tileno resno precno compno layno start_pos  end_pos   disto\n");
+            */
+            for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
+                /* I suppose components have same XRsiz, YRsiz */
+                /*int x0 = volume_info->tile_Ox + tileno - (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tw * volume_info->tile_x;*/
+                /*int y0 = volume_info->tile_Ox + (int)floor( (float)tileno/(float)volume_info->tw ) * volume_info->tile_y;*/
+                int x0 = volume_info->tile_Ox + (int)floor((float)tileno /
+                         (float)volume_info->tw) * volume_info->tile_x;
+                int y0 = volume_info->tile_Oy + (int)floor((float)tileno /
+                         (float)volume_info->th) * volume_info->tile_y;
+                int z0 = volume_info->tile_Ox + (int)floor((float)tileno /
+                         (float)volume_info->tl) * volume_info->tile_z;
+                int x1 = x0 + volume_info->tile_x;
+                int y1 = y0 + volume_info->tile_y;
+                int z1 = z0 + volume_info->tile_z;
+                for (z = z0; z < z1; z++) {
+                    for (y = y0; y < y1; y++) {
+                        for (x = x0; x < x1; x++) {
+                            for (compno = 0; compno < volume_info->comp; compno++) {
+                                int prec_max = volume_info->tile[tileno].prctno[0][resno] *
+                                               volume_info->tile[tileno].prctno[1][resno] *
+                                               volume_info->tile[tileno].prctno[2][resno];
+                                for (precno = 0; precno < prec_max; precno++) {
+                                    int pcnx = volume_info->tile[tileno].prctno[0][resno];
+                                    int pcx = (int) pow(2, volume_info->tile[tileno].prctsiz[0][resno] +
+                                                        volume_info->decomposition[0] - resno);
+                                    int pcy = (int) pow(2, volume_info->tile[tileno].prctsiz[1][resno] +
+                                                        volume_info->decomposition[1] - resno);
+                                    int pcz = (int) pow(2, volume_info->tile[tileno].prctsiz[2][resno] +
+                                                        volume_info->decomposition[2] - resno);
+                                    int precno_x = precno - (int) floor((float)precno / (float)pcnx) * pcnx;
+                                    int precno_y = (int) floor((float)precno / (float)pcnx);
+                                    if (precno_y * pcy == y) {
+                                        if (precno_x * pcx == x) {
+                                            for (layno = 0; layno < volume_info->layer; layno++) {
+                                                start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
+                                                end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
+                                                disto = volume_info->tile[tileno].packet[pack_nb].disto;
+                                                fprintf(stream, "%4d %6d %5d %6d %6d %7d %9d %9d %8e\n",
+                                                        pack_nb, tileno, resno, precno, compno, layno, start_pos, end_pos, disto);
+                                                total_disto += disto;
+                                                pack_nb++;
+                                            }
+                                        }
+                                    }
+                                } /* precno */
+                            } /* compno */
+                        } /* x = x0..x1 */
+                    } /* y = y0..y1 */
+                } /* z = z0..z1 */
+            } /* resno */
+        } /* RPCL */
+        else if (volume_info->prog == PCRL) {   /* PCRL */
+            /* I suppose components have same XRsiz, YRsiz */
+            int x0 = volume_info->tile_Ox + tileno - (int)floor((float)tileno /
+                     (float)volume_info->tw) * volume_info->tw * volume_info->tile_x;
+            int y0 = volume_info->tile_Ox + (int)floor((float)tileno /
+                     (float)volume_info->tw) * volume_info->tile_y;
+            int z0 = volume_info->tile_Oz + (int)floor((float)tileno /
+                     (float)volume_info->tw) * volume_info->tile_z;
+            int x1 = x0 + volume_info->tile_x;
+            int y1 = y0 + volume_info->tile_y;
+            int z1 = z0 + volume_info->tile_z;
+            /*
+            fprintf(stream, "\npack_nb tileno precno compno resno layno start_pos  end_pos   disto\n");
+            */
+            for (z = z0; z < z1; z++) {
+                for (y = y0; y < y1; y++) {
+                    for (x = x0; x < x1; x++) {
+                        for (compno = 0; compno < volume_info->comp; compno++) {
+                            for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
+                                int prec_max = volume_info->tile[tileno].prctno[0][resno] *
+                                               volume_info->tile[tileno].prctno[1][resno];
+                                for (precno = 0; precno < prec_max; precno++) {
+                                    int pcnx = volume_info->tile[tileno].prctno[0][resno];
+                                    int pcx = (int) pow(2, volume_info->tile[tileno].prctsiz[0][resno] +
+                                                        volume_info->decomposition[0] - resno);
+                                    int pcy = (int) pow(2, volume_info->tile[tileno].prctsiz[1][resno] +
+                                                        volume_info->decomposition[1] - resno);
+                                    int pcz = (int) pow(2, volume_info->tile[tileno].prctsiz[2][resno] +
+                                                        volume_info->decomposition[2] - resno);
+                                    int precno_x = precno - (int) floor((float)precno / (float)pcnx) * pcnx;
+                                    int precno_y = (int) floor((float)precno / (float)pcnx);
+                                    int precno_z = (int) floor((float)precno / (float)pcnx);
+                                    if (precno_z * pcz == z) {
+                                        if (precno_y * pcy == y) {
+                                            if (precno_x * pcx == x) {
+                                                for (layno = 0; layno < volume_info->layer; layno++) {
+                                                    start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
+                                                    end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
+                                                    disto = volume_info->tile[tileno].packet[pack_nb].disto;
+                                                    fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d %9d %8e\n",
+                                                            pack_nb, tileno, precno, compno, resno, layno, start_pos, end_pos, disto);
+                                                    total_disto += disto;
+                                                    pack_nb++;
+                                                }
+                                            }
+                                        }
+                                    }
+                                } /* precno */
+                            } /* resno */
+                        } /* compno */
+                    } /* x = x0..x1 */
+                } /* y = y0..y1 */
+            }
+        } /* PCRL */
+        else {  /* CPRL */
+            /*
+            fprintf(stream, "\npack_nb tileno compno precno resno layno start_pos  end_pos   disto\n");
+            */
+            for (compno = 0; compno < volume_info->comp; compno++) {
+                /* I suppose components have same XRsiz, YRsiz */
+                int x0 = volume_info->tile_Ox + tileno - (int)floor((float)tileno /
+                         (float)volume_info->tw) * volume_info->tw * volume_info->tile_x;
+                int y0 = volume_info->tile_Ox + (int)floor((float)tileno /
+                         (float)volume_info->tw) * volume_info->tile_y;
+                int z0 = volume_info->tile_Oz + (int)floor((float)tileno /
+                         (float)volume_info->tw) * volume_info->tile_z;
+                int x1 = x0 + volume_info->tile_x;
+                int y1 = y0 + volume_info->tile_y;
+                int z1 = z0 + volume_info->tile_z;
+                for (z = z0; z < z1; z++) {
+                    for (y = y0; y < y1; y++) {
+                        for (x = x0; x < x1; x++) {
+                            for (resno = 0; resno < volume_info->decomposition[0] + 1; resno++) {
+                                int prec_max = volume_info->tile[tileno].prctno[0][resno] *
+                                               volume_info->tile[tileno].prctno[1][resno] *
+                                               volume_info->tile[tileno].prctno[2][resno];
+                                for (precno = 0; precno < prec_max; precno++) {
+                                    int pcnx = volume_info->tile[tileno].prctno[0][resno];
+                                    int pcny = volume_info->tile[tileno].prctno[1][resno];
+                                    int pcx = (int) pow(2, volume_info->tile[tileno].prctsiz[0][resno] +
+                                                        volume_info->decomposition[0] - resno);
+                                    int pcy = (int) pow(2, volume_info->tile[tileno].prctsiz[1][resno] +
+                                                        volume_info->decomposition[1] - resno);
+                                    int pcz = (int) pow(2, volume_info->tile[tileno].prctsiz[2][resno] +
+                                                        volume_info->decomposition[2] - resno);
+                                    int precno_x = precno - (int) floor((float)precno / (float)pcnx) * pcnx;
+                                    int precno_y = (int) floor((float)precno / (float)pcnx);
+                                    int precno_z = 0; /*???*/
+                                    if (precno_z * pcz == z) {
+                                        if (precno_y * pcy == y) {
+                                            if (precno_x * pcx == x) {
+                                                for (layno = 0; layno < volume_info->layer; layno++) {
+                                                    start_pos = volume_info->tile[tileno].packet[pack_nb].start_pos;
+                                                    end_pos = volume_info->tile[tileno].packet[pack_nb].end_pos;
+                                                    disto = volume_info->tile[tileno].packet[pack_nb].disto;
+                                                    fprintf(stream, "%4d %6d %6d %6d %5d %7d %9d %9d %8e\n",
+                                                            pack_nb, tileno, compno, precno, resno, layno, start_pos, end_pos, disto);
+                                                    total_disto += disto;
+                                                    pack_nb++;
+                                                }
+                                            }
+                                        }
+                                    }
+                                } /* precno */
+                            } /* resno */
+                        } /* x = x0..x1 */
+                    } /* y = y0..y1 */
+                } /* z = z0..z1 */
+            } /* comno */
+        } /* CPRL */
+    } /* tileno */
+
+    fprintf(stream, "SE_MAX\t%8e\n", volume_info->D_max);   /* SE max */
+    fprintf(stream, "SE_TOTAL\t%.8e\n", total_disto);           /* SE totale */
+
+
+    fclose(stream);
+
+    return 1;
+}
+
+bool j3d_encode(opj_j3d_t *j3d, opj_cio_t *cio, opj_volume_t *volume,
+                char *index)
+{
+    int tileno, compno;
+    opj_volume_info_t *volume_info = NULL;
+    opj_cp_t *cp = NULL;
+    opj_tcd_t *tcd = NULL;  /* TCD component */
+
+    j3d->cio = cio;
+    j3d->volume = volume;
+    cp = j3d->cp;
+
+    /*j3d_dump_volume(stdout, volume);
+    j3d_dump_cp(stdout, volume, cp);*/
+
+    /* INDEX >> */
+    volume_info = j3d->volume_info;
+    if (volume_info && cp->index_on) {
+        volume_info->index_on = cp->index_on;
+        volume_info->tile = (opj_tile_info_t *) opj_malloc(cp->tw * cp->th * cp->tl *
+                            sizeof(opj_tile_info_t));
+        volume_info->volume_w = volume->x1 - volume->x0;
+        volume_info->volume_h = volume->y1 - volume->y0;
+        volume_info->volume_l = volume->z1 - volume->z0;
+        volume_info->prog = (&cp->tcps[0])->prg;
+        volume_info->tw = cp->tw;
+        volume_info->th = cp->th;
+        volume_info->tl = cp->tl;
+        volume_info->tile_x = cp->tdx;  /* new version parser */
+        volume_info->tile_y = cp->tdy;  /* new version parser */
+        volume_info->tile_z = cp->tdz;  /* new version parser */
+        volume_info->tile_Ox = cp->tx0; /* new version parser */
+        volume_info->tile_Oy = cp->ty0; /* new version parser */
+        volume_info->tile_Oz = cp->tz0; /* new version parser */
+        volume_info->transform_format = cp->transform_format;
+        volume_info->encoding_format = cp->encoding_format;
+        volume_info->comp = volume->numcomps;
+        volume_info->layer = (&cp->tcps[0])->numlayers;
+        volume_info->decomposition[0] = (&cp->tcps[0])->tccps->numresolution[0] - 1;
+        volume_info->decomposition[1] = (&cp->tcps[0])->tccps->numresolution[1] - 1;
+        volume_info->decomposition[2] = (&cp->tcps[0])->tccps->numresolution[2] - 1;
+        volume_info->D_max = 0;     /* ADD Marcela */
+    }
+    /* << INDEX */
+
+    j3d_write_soc(j3d);
+    j3d_write_siz(j3d);
+    if (j3d->cinfo->codec_format == CODEC_J3D) {
+        j3d_write_cap(j3d);
+        j3d_write_nsi(j3d);
+    }
+
+    /*if (j3d->cp->transform_format != TRF_2D_DWT || j3d->cp->encoding_format != ENCOD_2EB)*/
+    j3d_write_com(j3d);
+
+    j3d_write_cod(j3d);
+    j3d_write_qcd(j3d);
+    for (compno = 0; compno < volume->numcomps; compno++) {
+        opj_tcp_t *tcp = &cp->tcps[0];
+        if (tcp->tccps[compno].roishift) {
+            j3d_write_rgn(j3d, compno, 0);
+        }
+    }
+    /*Optional 15444-2 markers*/
+    if (j3d->cp->tcps->tccps[0].atk != NULL) {
         j3d_write_atk(j3d);
-       if (j3d->volume->comps[0].dcoffset != 0)
+    }
+    if (j3d->volume->comps[0].dcoffset != 0) {
         j3d_write_dco(j3d);
+    }
+
+    /* INDEX >> */
+    if (volume_info && volume_info->index_on) {
+        volume_info->main_head_end = cio_tell(cio) - 1;
+    }
+    /* << INDEX */
+
+    /* create the tile encoder */
+    tcd = tcd_create(j3d->cinfo);
+
+    /* encode each tile */
+    for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
+        opj_event_msg(j3d->cinfo, EVT_INFO, "tile number %d / %d\n", tileno + 1,
+                      cp->tw * cp->th * cp->tl);
+
+        j3d->curtileno = tileno;
+
+        /* initialisation before tile encoding  */
+        if (tileno == 0) {
+            tcd_malloc_encode(tcd, volume, cp, j3d->curtileno);
+        } else {
+            tcd_init_encode(tcd, volume, cp, j3d->curtileno);
+        }
+
+        /* INDEX >> */
+        if (volume_info && volume_info->index_on) {
+            volume_info->tile[j3d->curtileno].num_tile = j3d->curtileno;
+            volume_info->tile[j3d->curtileno].start_pos = cio_tell(cio) +
+                    j3d->pos_correction;
+        }
+        /* << INDEX */
+
+        j3d_write_sot(j3d);
+
+        for (compno = 1; compno < volume->numcomps; compno++) {
+            j3d_write_coc(j3d, compno);
+            j3d_write_qcc(j3d, compno);
+        }
+
+        if (cp->tcps[tileno].numpocs) {
+            j3d_write_poc(j3d);
+        }
+        j3d_write_sod(j3d, tcd); /*--> tcd_encode_tile*/
+
+        /* INDEX >> */
+        if (volume_info && volume_info->index_on) {
+            volume_info->tile[j3d->curtileno].end_pos = cio_tell(cio) + j3d->pos_correction
+                    - 1;
+        }
+        /* << INDEX */
+    }
+
+    /* destroy the tile encoder */
+    tcd_free_encode(tcd);
+    tcd_destroy(tcd);
+
+    j3d_write_eoc(j3d);
+
+    /* Creation of the index file */
+    if (volume_info && volume_info->index_on) {
+        if (!j3d_create_index(j3d, cio, volume_info, index)) {
+            opj_event_msg(j3d->cinfo, EVT_ERROR, "failed to create index file %s\n", index);
+            return false;
+        }
+    }
 
-       /* INDEX >> */
-       if(volume_info && volume_info->index_on) {
-               volume_info->main_head_end = cio_tell(cio) - 1;
-       }
-       /* << INDEX */
-
-       /* create the tile encoder */
-       tcd = tcd_create(j3d->cinfo);
-
-       /* encode each tile */
-       for (tileno = 0; tileno < cp->tw * cp->th * cp->tl; tileno++) {
-               opj_event_msg(j3d->cinfo, EVT_INFO, "tile number %d / %d\n", tileno + 1, cp->tw * cp->th * cp->tl);
-               
-               j3d->curtileno = tileno;
-
-               /* initialisation before tile encoding  */
-               if (tileno == 0) {      
-                       tcd_malloc_encode(tcd, volume, cp, j3d->curtileno);
-               } else {
-                       tcd_init_encode(tcd, volume, cp, j3d->curtileno);
-               }
-               
-               /* INDEX >> */
-               if(volume_info && volume_info->index_on) {
-                       volume_info->tile[j3d->curtileno].num_tile = j3d->curtileno;
-                       volume_info->tile[j3d->curtileno].start_pos = cio_tell(cio) + j3d->pos_correction;
-               }
-               /* << INDEX */
-               
-               j3d_write_sot(j3d);
-       
-               for (compno = 1; compno < volume->numcomps; compno++) {
-                       j3d_write_coc(j3d, compno);
-                       j3d_write_qcc(j3d, compno);
-               }
-
-               if (cp->tcps[tileno].numpocs) {
-                       j3d_write_poc(j3d);
-               }
-               j3d_write_sod(j3d, tcd); /*--> tcd_encode_tile*/
-
-               /* INDEX >> */
-               if(volume_info && volume_info->index_on) {
-                       volume_info->tile[j3d->curtileno].end_pos = cio_tell(cio) + j3d->pos_correction - 1;
-               }
-               /* << INDEX */          
-       }
-       
-       /* destroy the tile encoder */
-       tcd_free_encode(tcd);
-       tcd_destroy(tcd);
-
-       j3d_write_eoc(j3d);
-       
-       /* Creation of the index file */
-       if(volume_info && volume_info->index_on) {
-               if(!j3d_create_index(j3d, cio, volume_info, index)) {
-                       opj_event_msg(j3d->cinfo, EVT_ERROR, "failed to create index file %s\n", index);
-                       return false;
-               }
-       }
-         
-       return true;
+    return true;
 }
 
 /* ----------------------------------------------------------------------- */